DIAScoring

class pyopenms.DIAScoring

Bases: object

Cython implementation of _DIAScoring

Original C++ documentation is available here

– Inherits from [‘DefaultParamHandler’]

__init__(self) → None

Methods

__init__(self)
dia_by_ion_score
dia_ms1_isotope_scores(self, precursor_mz, ...)
dia_ms1_isotope_scores_averagine(self, ...)
dia_ms1_massdiff_score(self, precursor_mz, ...)
getDefaults(self)	Returns the default parameters
getName(self)	Returns the name
getParameters(self)	Returns the parameters
getSubsections(self)
score_with_isotopes(self, spectrum, ...)
setName(self, in_0)	Sets the name
setParameters(self, param)	Sets the parameters

dia_by_ion_score()

dia_ms1_isotope_scores(self, precursor_mz: float, spectrum: OSSpectrum, isotope_corr: float, isotope_overlap: float, sum_formula: EmpiricalFormula) → None

dia_ms1_isotope_scores_averagine(self, precursor_mz: float, spectrum: OSSpectrum, isotope_corr: float, isotope_overlap: float, charge_state: int) → None

dia_ms1_massdiff_score(self, precursor_mz: float, spectrum: OSSpectrum, ppm_score: float) → bool

getDefaults(self) → Param

Returns the default parameters

getName(self) → Union[bytes, str, String]

Returns the name

getParameters(self) → Param

Returns the parameters

getSubsections(self) → List[bytes]

score_with_isotopes(self, spectrum: OSSpectrum, transitions: List[LightTransition], dotprod: float, manhattan: float) → None

setName(self, in_0: Union[bytes, str, String]) → None

Sets the name

setParameters(self, param: Param) → None

Sets the parameters