SiriusMzTabWriter

class pyopenms.SiriusMzTabWriter

Bases: object

Cython implementation of _SiriusMzTabWriter

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: SiriusMzTabWriter) → None

Methods

__init__	Overload:
extractFeatureId	__static_SiriusMzTabWriter_extractFeatureId(path: Union[bytes, str, String] ) -> Union[bytes, str, String]
extractScanIndex	__static_SiriusMzTabWriter_extractScanIndex(path: Union[bytes, str, String] ) -> int
extractScanNumber	__static_SiriusMzTabWriter_extractScanNumber(path: Union[bytes, str, String] ) -> int
extractSpectrumMSInfo	__static_SiriusMzTabWriter_extractSpectrumMSInfo(single_sirius_path: Union[bytes, str, String] ) -> SiriusMzTabWriter_SiriusSpectrumMSInfo
extract_columnname_to_columnindex	__static_SiriusMzTabWriter_extract_columnname_to_columnindex(csvfile: CsvFile ) -> Dict[bytes, int]
read	__static_SiriusMzTabWriter_read(sirius_output_paths: List[bytes] , original_input_mzml: Union[bytes, str, String] , top_n_hits: int , result: MzTab ) -> None

extractFeatureId()

__static_SiriusMzTabWriter_extractFeatureId(path: Union[bytes, str, String] ) -> Union[bytes, str, String]

extractScanIndex()

__static_SiriusMzTabWriter_extractScanIndex(path: Union[bytes, str, String] ) -> int

extractScanNumber()

__static_SiriusMzTabWriter_extractScanNumber(path: Union[bytes, str, String] ) -> int

extractSpectrumMSInfo()

__static_SiriusMzTabWriter_extractSpectrumMSInfo(single_sirius_path: Union[bytes, str, String] ) -> SiriusMzTabWriter_SiriusSpectrumMSInfo

extract_columnname_to_columnindex()

__static_SiriusMzTabWriter_extract_columnname_to_columnindex(csvfile: CsvFile ) -> Dict[bytes, int]

read()

__static_SiriusMzTabWriter_read(sirius_output_paths: List[bytes] , original_input_mzml: Union[bytes, str, String] , top_n_hits: int , result: MzTab ) -> None