ProteinResolver

class pyopenms.ProteinResolver

Bases: object

Cython implementation of _ProteinResolver

Original C++ documentation is available here

– Inherits from [‘DefaultParamHandler’]

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: ProteinResolver) → None

Methods

__init__	Overload:
clearResult(self)
countTargetDecoy	Overload:
getDefaults(self)	Returns the default parameters
getName(self)	Returns the name
getParameters(self)	Returns the parameters
getPeptideHit	Overload:
getPeptideIdentification	Overload:
getResults(self)
getSubsections(self)
resolveConsensus(self, consensus)
resolveID(self, peptide_identifications)
setName(self, in_0)	Sets the name
setParameters(self, param)	Sets the parameters
setProteinData(self, protein_data)

clearResult(self) → None

countTargetDecoy()

Overload:

countTargetDecoy(self, msd_groups: List[MSDGroup], consensus: ConsensusMap) → None

Overload:

countTargetDecoy(self, msd_groups: List[MSDGroup], peptide_nodes: List[PeptideIdentification]) → None

getDefaults(self) → Param

Returns the default parameters

getName(self) → Union[bytes, str, String]

Returns the name

getParameters(self) → Param

Returns the parameters

getPeptideHit()

Overload:

getPeptideHit(self, consensus: ConsensusMap, peptide: PeptideEntry) → PeptideHit

Overload:

getPeptideHit(self, peptide_nodes: List[PeptideIdentification], peptide: PeptideEntry) → PeptideHit

getPeptideIdentification()

Overload:

getPeptideIdentification(self, consensus: ConsensusMap, peptide: PeptideEntry) → PeptideIdentification

Overload:

getPeptideIdentification(self, peptide_nodes: List[PeptideIdentification], peptide: PeptideEntry) → PeptideIdentification

getResults(self) → List[ResolverResult]

getSubsections(self) → List[bytes]

resolveConsensus(self, consensus: ConsensusMap) → None

resolveID(self, peptide_identifications: List[PeptideIdentification]) → None

setName(self, in_0: Union[bytes, str, String]) → None

Sets the name

setParameters(self, param: Param) → None

Sets the parameters

setProteinData(self, protein_data: List[FASTAEntry]) → None