PercolatorOutfile

class pyopenms.PercolatorOutfile

Bases: object

Cython implementation of _PercolatorOutfile

Original C++ documentation is available here

Class for reading Percolator tab-delimited output files

For PSM-level output, the file extension should be “.psms”

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: PercolatorOutfile) → None

Methods

__init__	Overload:
getScoreType(self, score_type_name)	Returns a score type given its name
load(self, filename, proteins, peptides, ...)	Loads a Percolator output file

PercolatorOutfile_ScoreType

alias of pyopenms._pyopenms_2.__PercolatorOutfile_ScoreType

getScoreType(self, score_type_name: Union[bytes, str, String]) → int

Returns a score type given its name

load(self, filename: Union[bytes, str, String], proteins: ProteinIdentification, peptides: List[PeptideIdentification], lookup: SpectrumMetaDataLookup, output_score: int) → None

Loads a Percolator output file