XTandemInfile

class pyopenms.XTandemInfile

Bases: object

Cython implementation of _XTandemInfile

Original C++ documentation is available here

__init__(self) → None

Methods

`__init__`(self)
`getCleavageSite`(self)
`getDefaultParametersFilename`(self)
`getFragmentMassErrorUnit`(self)
`getFragmentMassTolerance`(self)
`getInputFilename`(self)
`getMaxPrecursorCharge`(self)
`getMaxValidEValue`(self)
`getModifications`(self)
`getNumberOfMissedCleavages`(self)
`getNumberOfThreads`(self)
`getOutputFilename`(self)
`getOutputResults`(self)
`getPrecursorErrorType`(self)
`getPrecursorMassErrorUnit`(self)
`getPrecursorMassToleranceMinus`(self)
`getPrecursorMassTolerancePlus`(self)
`getTaxon`(self)
`getTaxonomyFilename`(self)
`setAllowIsotopeError`(self, allow_isotope_error)
`setCleavageSite`(self, cleavage_site)
`setDefaultParametersFilename`(self, filename)
`setFragmentMassErrorUnit`(self, unit)
`setFragmentMassTolerance`(self, tolerance)
`setInputFilename`(self, input_file)
`setMaxPrecursorCharge`(self, max_charge)
`setMaxValidEValue`(self, value)
`setModifications`(self, mods)
`setNumberOfMissedCleavages`(self, ...)
`setNumberOfThreads`(self, threads)
`setOutputFilename`(self, output)
`setOutputResults`(self, result)
`setPrecursorErrorType`(self, mono_isotopic)
`setPrecursorMassErrorUnit`(self, unit)
`setPrecursorMassToleranceMinus`(self, tol)
`setPrecursorMassTolerancePlus`(self, tol)
`setSemiCleavage`(self, semi_cleavage)
`setTaxon`(self, taxon)
`setTaxonomyFilename`(self, filename)
`write`(self, filename, ...)

ErrorUnit: alias of pyopenms._pyopenms_1.__ErrorUnit

MassType: alias of pyopenms._pyopenms_1.__MassType

getCleavageSite(self) → Union[bytes, str, String]

getDefaultParametersFilename(self) → Union[bytes, str, String]

getFragmentMassErrorUnit(self) → int

getFragmentMassTolerance(self) → float

getInputFilename(self) → Union[bytes, str, String]

getMaxPrecursorCharge(self) → int

getMaxValidEValue(self) → float

getModifications(self) → ModificationDefinitionsSet

getNumberOfMissedCleavages(self) → int

getNumberOfThreads(self) → int

getOutputFilename(self) → Union[bytes, str, String]

getOutputResults(self) → Union[bytes, str, String]

getPrecursorErrorType(self) → int

getPrecursorMassErrorUnit(self) → int

getPrecursorMassToleranceMinus(self) → float

getPrecursorMassTolerancePlus(self) → float

getTaxon(self) → Union[bytes, str, String]

getTaxonomyFilename(self) → Union[bytes, str, String]

setAllowIsotopeError(self, allow_isotope_error: bool) → None

setCleavageSite(self, cleavage_site: Union[bytes, str, String]) → None

setDefaultParametersFilename(self, filename: Union[bytes, str, String]) → None

setFragmentMassErrorUnit(self, unit: int) → None

setFragmentMassTolerance(self, tolerance: float) → None

setInputFilename(self, input_file: Union[bytes, str, String]) → None

setMaxPrecursorCharge(self, max_charge: int) → None

setMaxValidEValue(self, value: float) → None

setModifications(self, mods: ModificationDefinitionsSet) → None

setNumberOfMissedCleavages(self, missed_cleavages: int) → None

setNumberOfThreads(self, threads: int) → None

setOutputFilename(self, output: Union[bytes, str, String]) → None

setOutputResults(self, result: Union[bytes, str, String]) → None

setPrecursorErrorType(self, mono_isotopic: int) → None

setPrecursorMassErrorUnit(self, unit: int) → None

setPrecursorMassToleranceMinus(self, tol: float) → None

setPrecursorMassTolerancePlus(self, tol: float) → None

setSemiCleavage(self, semi_cleavage: bool) → None

setTaxon(self, taxon: Union[bytes, str, String]) → None

setTaxonomyFilename(self, filename: Union[bytes, str, String]) → None

write(self, filename: Union[bytes, str, String], ignore_member_parameters: bool, force_default_mods: bool) → None