PeptideHit

class pyopenms.PeptideHit

Bases: object

Cython implementation of _PeptideHit

Original C++ documentation is available here: – Inherits from [‘MetaInfoInterface’]

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, score: float, rank: int, charge: int, sequence: AASequence) → None

Overload:

__init__(self, in_0: PeptideHit) → None

Methods

`__init__`	Overload:
`addAnalysisResults`(self, aresult)	Add information on (search engine) sub scores associated with this PSM
`addPeptideEvidence`(self, in_0)	Adds information on a peptide that is (potentially) identified by this PSM
`clearMetaInfo`(self)	Removes all meta values
`extractProteinAccessionsSet`(self)	Extracts the set of non-empty protein accessions from peptide evidences
`getAnalysisResults`(self)	Returns information on (search engine) sub scores associated with this PSM
`getCharge`(self)	Returns the charge of the peptide
`getKeys`(self, keys)	Fills the given vector with a list of all keys for which a value is set
`getMetaValue`(self, in_0)	Returns the value corresponding to a string, or
`getPeakAnnotations`(self)	Returns the fragment annotations
`getPeptideEvidences`(self)	Returns information on peptides (potentially) identified by this PSM
`getRank`(self)	Returns the PSM rank
`getScore`(self)	Returns the PSM score
`getSequence`(self)	Returns the peptide sequence without trailing or following spaces
`isMetaEmpty`(self)	Returns if the MetaInfo is empty
`metaRegistry`(self)	Returns a reference to the MetaInfoRegistry
`metaValueExists`(self, in_0)	Returns whether an entry with the given name exists
`removeMetaValue`(self, in_0)	Removes the DataValue corresponding to name if it exists
`setAnalysisResults`(self, aresult)	Sets information on (search engine) sub scores associated with this PSM
`setCharge`(self, in_0)	Sets the charge of the peptide
`setMetaValue`(self, in_0, in_1)	Sets the DataValue corresponding to a name
`setPeakAnnotations`(self, in_0)	Sets the fragment annotations
`setPeptideEvidences`(self, in_0)	Sets information on peptides (potentially) identified by this PSM
`setRank`(self, in_0)	Sets the PSM rank
`setScore`(self, in_0)	Sets the PSM score
`setSequence`(self, in_0)	Sets the peptide sequence

addAnalysisResults(self, aresult: PeptideHit_AnalysisResult) → None: Add information on (search engine) sub scores associated with this PSM

addPeptideEvidence(self, in_0: PeptideEvidence) → None: Adds information on a peptide that is (potentially) identified by this PSM

clearMetaInfo(self) → None: Removes all meta values

extractProteinAccessionsSet(self) → Set[bytes]: Extracts the set of non-empty protein accessions from peptide evidences

getAnalysisResults(self) → List[PeptideHit_AnalysisResult]: Returns information on (search engine) sub scores associated with this PSM

getCharge(self) → int: Returns the charge of the peptide

getKeys(self, keys: List[bytes]) → None: Fills the given vector with a list of all keys for which a value is set

getMetaValue(self, in_0: Union[bytes, str, String]) → Union[int, float, bytes, str, List[int], List[float], List[bytes]]: Returns the value corresponding to a string, or

getPeakAnnotations(self) → List[PeptideHit_PeakAnnotation]: Returns the fragment annotations

getPeptideEvidences(self) → List[PeptideEvidence]: Returns information on peptides (potentially) identified by this PSM

getRank(self) → int: Returns the PSM rank

getScore(self) → float: Returns the PSM score

getSequence(self) → AASequence: Returns the peptide sequence without trailing or following spaces

isMetaEmpty(self) → bool: Returns if the MetaInfo is empty

metaRegistry(self) → MetaInfoRegistry: Returns a reference to the MetaInfoRegistry

metaValueExists(self, in_0: Union[bytes, str, String]) → bool: Returns whether an entry with the given name exists

removeMetaValue(self, in_0: Union[bytes, str, String]) → None: Removes the DataValue corresponding to name if it exists

setAnalysisResults(self, aresult: List[PeptideHit_AnalysisResult]) → None: Sets information on (search engine) sub scores associated with this PSM

setCharge(self, in_0: int) → None: Sets the charge of the peptide

setMetaValue(self, in_0: Union[bytes, str, String], in_1: Union[int, float, bytes, str, List[int], List[float], List[bytes]]) → None: Sets the DataValue corresponding to a name

setPeakAnnotations(self, in_0: List[PeptideHit_PeakAnnotation]) → None: Sets the fragment annotations

setPeptideEvidences(self, in_0: List[PeptideEvidence]) → None: Sets information on peptides (potentially) identified by this PSM

setRank(self, in_0: int) → None: Sets the PSM rank

setScore(self, in_0: float) → None: Sets the PSM score

setSequence(self, in_0: AASequence) → None: Sets the peptide sequence