CVTerm_ControlledVocabulary

class pyopenms.CVTerm_ControlledVocabulary

Bases: object

Cython implementation of _CVTerm_ControlledVocabulary

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, rhs: CVTerm_ControlledVocabulary) → None

Methods

`__init__`	Overload:
`getXRefTypeName`(self, type)
`isHigherBetterScore`(self, term)
`toXMLString`	Overload:

Attributes

`children`
`description`
`id`
`name`
`obsolete`
`parents`
`synonyms`
`units`
`unparsed`
`xref_binary`
`xref_type`

children

description

getXRefTypeName(self, type: int) → Union[bytes, str, String]

id

isHigherBetterScore(self, term: CVTerm_ControlledVocabulary) → bool

name

obsolete

parents

synonyms

toXMLString()

Overload:

toXMLString(self, ref: Union[bytes, str, String], value: Union[bytes, str, String]) → Union[bytes, str, String]

Get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available

Overload:

toXMLString(self, ref: Union[bytes, str, String], value: Union[int, float, bytes, str, List[int], List[float], List[bytes]]) → Union[bytes, str, String]

Get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available

units

unparsed

xref_binary

xref_type