MorphologicalFilter
- class pyopenms.MorphologicalFilter
Bases:
objectCython implementation of _MorphologicalFilter
- Original C++ documentation is available here
– Inherits from [‘DefaultParamHandler’, ‘ProgressLogger’]
- __init__(self) None
Methods
__init__(self)endProgress(self)Ends the progress display
filter(self, spectrum)Applies the morphological filtering operation to an MSSpectrum
filterExperiment(self, exp)Applies the morphological filtering operation to an MSExperiment
getDefaults(self)Returns the default parameters
getLogType(self)Returns the type of progress log being used
getName(self)Returns the name
getParameters(self)Returns the parameters
getSubsections(self)nextProgress(self)Increment progress by 1 (according to range begin-end)
setLogType(self, in_0)Sets the progress log that should be used.
setName(self, in_0)Sets the name
setParameters(self, param)Sets the parameters
setProgress(self, value)Sets the current progress
startProgress(self, begin, end, label)- endProgress(self) None
Ends the progress display
- filter(self, spectrum: MSSpectrum) None
Applies the morphological filtering operation to an MSSpectrum
If the size of the structuring element is given in ‘Thomson’, the number of data points for the structuring element is computed as follows:
- filterExperiment(self, exp: MSExperiment) None
Applies the morphological filtering operation to an MSExperiment
The size of the structuring element is computed for each spectrum individually, if it is given in ‘Thomson’ See the filtering method for MSSpectrum for details
- getLogType(self) int
Returns the type of progress log being used
- getSubsections(self) List[bytes]
- nextProgress(self) None
Increment progress by 1 (according to range begin-end)
- setLogType(self, in_0: int) None
Sets the progress log that should be used. The default type is NONE!
- setProgress(self, value: int) None
Sets the current progress