OpenSwathDataAccessHelper

class pyopenms.OpenSwathDataAccessHelper

Bases: object

Cython implementation of _OpenSwathDataAccessHelper

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: OpenSwathDataAccessHelper) → None

Methods

__init__	Overload:
convertPeptideToAASequence(self, peptide, ...)	Converts from the LightCompound to an OpenMS AASequence (with correct modifications)
convertTargetedCompound(self, pep, p)	Converts from the OpenMS TargetedExperiment Peptide to the LightTargetedExperiment Peptide
convertTargetedExp(self, transition_exp_, ...)	Converts from the OpenMS TargetedExperiment to the OpenMs LightTargetedExperiment
convertToChromatogramPtr
convertToOpenMSChromatogram(self, cptr, ...)	Converts a ChromatogramPtr to an OpenMS Chromatogram
convertToOpenMSChromatogramFilter(self, ...)
convertToOpenMSSpectrum(self, sptr, spectrum)	Converts a SpectrumPtr to an OpenMS Spectrum
convertToSpectrumPtr

convertPeptideToAASequence(self, peptide: LightCompound, aa_sequence: AASequence) → None

Converts from the LightCompound to an OpenMS AASequence (with correct modifications)

convertTargetedCompound(self, pep: Peptide, p: LightCompound) → None

Converts from the OpenMS TargetedExperiment Peptide to the LightTargetedExperiment Peptide

convertTargetedExp(self, transition_exp_: TargetedExperiment, transition_exp: LightTargetedExperiment) → None

Converts from the OpenMS TargetedExperiment to the OpenMs LightTargetedExperiment

convertToChromatogramPtr()

convertToOpenMSChromatogram(self, cptr: OSChromatogram, chromatogram: MSChromatogram) → None

Converts a ChromatogramPtr to an OpenMS Chromatogram

convertToOpenMSChromatogramFilter(self, chromatogram: MSChromatogram, cptr: OSChromatogram, rt_min: float, rt_max: float) → None

convertToOpenMSSpectrum(self, sptr: OSSpectrum, spectrum: MSSpectrum) → None

Converts a SpectrumPtr to an OpenMS Spectrum

convertToSpectrumPtr()