ProtXMLFile

class pyopenms.ProtXMLFile

Bases: object

Cython implementation of _ProtXMLFile

Original C++ documentation is available here

Used to load (storing not supported, yet) ProtXML files

This class is used to load (storing not supported, yet) documents that implement the schema of ProtXML files

__init__(self) → None

Methods

__init__(self)
load(self, filename, protein_ids, peptide_ids)	Loads the identifications of an ProtXML file without identifier
store(self, filename, protein_ids, ...)

load(self, filename: Union[bytes, str, String], protein_ids: ProteinIdentification, peptide_ids: PeptideIdentification) → None

Loads the identifications of an ProtXML file without identifier

The information is read in and the information is stored in the corresponding variables

Raises

Exception: FileNotFound is thrown if the file could not be found

Raises

Exception: ParseError is thrown if an error occurs during parsing

store(self, filename: Union[bytes, str, String], protein_ids: ProteinIdentification, peptide_ids: PeptideIdentification, document_id: Union[bytes, str, String]) → None