TransitionPQPFile

class pyopenms.TransitionPQPFile

Bases: object

Cython implementation of _TransitionPQPFile

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: TransitionPQPFile) → None

Methods

__init__	Overload:
convertPQPToTargetedExperiment	Overload:
convertTSVToTargetedExperiment	Overload:
convertTargetedExperimentToPQP(self, ...)	Write out a targeted experiment (TraML structure) into a PQP file
convertTargetedExperimentToTSV(self, ...)
validateTargetedExperiment(self, targeted_exp)

convertPQPToTargetedExperiment()

Overload:

convertPQPToTargetedExperiment(self, filename: bytes, targeted_exp: TargetedExperiment, legacy_traml_id: bool) → None

Read in a PQP file and construct a targeted experiment (TraML structure)

Parameters

• filename – The input file

• targeted_exp – The output targeted experiment

• legacy_traml_id – Should legacy TraML IDs be used (boolean)?

Overload:

convertPQPToTargetedExperiment(self, filename: bytes, targeted_exp: LightTargetedExperiment, legacy_traml_id: bool) → None

Read in a PQP file and construct a targeted experiment (Light transition structure)

Parameters

• filename – The input file

• targeted_exp – The output targeted experiment

• legacy_traml_id – Should legacy TraML IDs be used (boolean)?

convertTSVToTargetedExperiment()

Overload:

convertTSVToTargetedExperiment(self, filename: bytes, filetype: int, targeted_exp: TargetedExperiment) → None

Overload:

convertTSVToTargetedExperiment(self, filename: bytes, filetype: int, targeted_exp: LightTargetedExperiment) → None

convertTargetedExperimentToPQP(self, filename: bytes, targeted_exp: TargetedExperiment) → None

Write out a targeted experiment (TraML structure) into a PQP file

Parameters

• filename – The output file

• targeted_exp – The targeted experiment

convertTargetedExperimentToTSV(self, filename: bytes, targeted_exp: TargetedExperiment) → None

validateTargetedExperiment(self, targeted_exp: TargetedExperiment) → None