MzQuantMLFile

class pyopenms.MzQuantMLFile

Bases: object

Cython implementation of _MzQuantMLFile

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: MzQuantMLFile) → None

Methods

__init__	Overload:
isSemanticallyValid(self, filename, errors, ...)	Checks if a file is valid with respect to the mapping file and the controlled vocabulary
load(self, filename, msq)	Loads a map from a MzQuantML file
store(self, filename, msq)	Stores a map in a MzQuantML file

isSemanticallyValid(self, filename: Union[bytes, str, String], errors: List[bytes], warnings: List[bytes]) → bool

Checks if a file is valid with respect to the mapping file and the controlled vocabulary

Parameters

• filename – File name of the file to be checked

• errors – Errors during the validation are returned in this output parameter

• warnings – Warnings during the validation are returned in this output parameter

Raises

Exception: UnableToCreateFile is thrown if the file could not be created

load(self, filename: Union[bytes, str, String], msq: MSQuantifications) → None

Loads a map from a MzQuantML file

Raises

Exception: FileNotFound is thrown if the file could not be opened

Raises

Exception: ParseError is thrown if an error occurs during parsing

store(self, filename: Union[bytes, str, String], msq: MSQuantifications) → None

Stores a map in a MzQuantML file

Raises

Exception: UnableToCreateFile is thrown if the file could not be created