PepXMLFile

class pyopenms.PepXMLFile

Bases: object

Cython implementation of _PepXMLFile

Original C++ documentation is available here

__init__(self) → None

Methods

__init__(self)
keepNativeSpectrumName(self, keep)
load	Overload:
setParseUnknownScores(self, parse_unknown_scores)
store	Overload:

keepNativeSpectrumName(self, keep: bool) → None

load()

Overload:

load(self, filename: Union[bytes, str, String], protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification]) → None

Overload:

load(self, filename: Union[bytes, str, String], protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification], experiment_name: Union[bytes, str, String]) → None

Overload:

load(self, filename: Union[bytes, str, String], protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification], experiment_name: Union[bytes, str, String], lookup: SpectrumMetaDataLookup) → None

setParseUnknownScores(self, parse_unknown_scores: bool) → None

store()

Overload:

store(self, filename: Union[bytes, str, String], protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification]) → None

Overload:

store(self, filename: Union[bytes, str, String], protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification], mz_file: Union[bytes, str, String], mz_name: Union[bytes, str, String], peptideprophet_analyzed: bool, rt_tolerance: float) → None