DecoyGenerator

class pyopenms.DecoyGenerator

Bases: object

Cython implementation of _DecoyGenerator

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: DecoyGenerator) → None

Methods

__init__

Overload:

reversePeptides(self, protein, protease)

Reverses the protein's peptide sequences between enzymatic cutting positions

reverseProtein(self, protein)

Reverses the protein sequence

setSeed(self, in_0)

shufflePeptides(self, aas, protease, ...)

Shuffle the protein's peptide sequences between enzymatic cutting positions, each peptide is shuffled @param max_attempts times to minimize sequence identity
reversePeptides(self, protein: AASequence, protease: Union[bytes, str, String]) → AASequence

Reverses the protein’s peptide sequences between enzymatic cutting positions

reverseProtein(self, protein: AASequence) → AASequence

Reverses the protein sequence

setSeed(self, in_0: int) → None
shufflePeptides(self, aas: AASequence, protease: Union[bytes, str, String], max_attempts: int) → AASequence

Shuffle the protein’s peptide sequences between enzymatic cutting positions, each peptide is shuffled @param max_attempts times to minimize sequence identity