SqMassFile

class pyopenms.SqMassFile

Bases: object

Cython implementation of _SqMassFile

Original C++ documentation is available here

An class that uses on-disk SQLite database to read and write spectra and chromatograms

This class provides functions to read and write spectra and chromatograms to disk using a SQLite database and store them in sqMass format. This allows users to access, select and filter spectra and chromatograms on-demand even in a large collection of data

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: SqMassFile) → None

Methods

__init__	Overload:
load(self, filename, map_)	Read / Write a complete mass spectrometric experiment
setConfig(self, config)
store(self, filename, map_)	Store an MSExperiment in sqMass format

load(self, filename: Union[bytes, str, String], map_: MSExperiment) → None

Read / Write a complete mass spectrometric experiment

setConfig(self, config: SqMassConfig) → None

store(self, filename: Union[bytes, str, String], map_: MSExperiment) → None

Store an MSExperiment in sqMass format