OMSSACSVFile

class pyopenms.OMSSACSVFile

Bases: object

Cython implementation of _OMSSACSVFile

Original C++ documentation is available here

File adapter for OMSSACSV files

The files contain the results of the OMSSA algorithm in a comma separated manner. This file adapter is able to load the data from such a file into the structures of OpenMS

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: OMSSACSVFile) → None

Methods

__init__

Overload:

load(self, filename, protein_identification, ...)

Loads a OMSSA file
load(self, filename: Union[bytes, str, String], protein_identification: ProteinIdentification, id_data: List[PeptideIdentification]) → None

Loads a OMSSA file

The content of the file is stored in features

Parameters

  • filename – The name of the file to read from

  • protein_identification – The protein ProteinIdentification data

  • id_data – The peptide ids of the file

Raises

Exception: FileNotFound is thrown if the file could not be opened

Raises

Exception: ParseError is thrown if an error occurs during parsing