TargetedExperiment

class pyopenms.TargetedExperiment

Bases: object

Cython implementation of _TargetedExperiment

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: TargetedExperiment) → None

Methods

`__init__`	Overload:
`addCV`(self, cv)
`addCompound`(self, rhs)
`addContact`(self, contact)
`addExcludeTarget`(self, target)
`addIncludeTarget`(self, target)
`addInstrument`(self, instrument)
`addPeptide`(self, rhs)
`addProtein`(self, protein)
`addPublication`(self, publication)
`addSoftware`(self, software)
`addSourceFile`(self, source_file)
`addTargetCVTerm`(self, cv_term)
`addTransition`(self, transition)
`clear`(self, clear_meta_data)
`containsInvalidReferences`(self)
`getCVs`(self)
`getCompoundByRef`(self, ref)
`getCompounds`(self)
`getContacts`(self)
`getExcludeTargets`(self)
`getIncludeTargets`(self)
`getInstruments`(self)
`getPeptideByRef`(self, ref)
`getPeptides`(self)
`getProteinByRef`(self, ref)
`getProteins`(self)
`getPublications`(self)
`getSoftware`(self)
`getSourceFiles`(self)
`getTargetCVTerms`(self)
`getTransitions`(self)
`hasCompound`(self, ref)
`hasPeptide`(self, ref)
`hasProtein`(self, ref)
`setCVs`(self, cvs)
`setCompounds`(self, rhs)
`setContacts`(self, contacts)
`setExcludeTargets`(self, targets)
`setIncludeTargets`(self, targets)
`setInstruments`(self, instruments)
`setPeptides`(self, rhs)
`setProteins`(self, proteins)
`setPublications`(self, publications)
`setSoftware`(self, software)
`setSourceFiles`(self, source_files)
`setTargetCVTerms`(self, cv_terms)
`setTargetMetaValue`(self, name, value)
`setTransitions`(self, transitions)
`sortTransitionsByProductMZ`(self)

addCV(self, cv: CV) → None

addCompound(self, rhs: Compound) → None

addContact(self, contact: Contact) → None

addExcludeTarget(self, target: IncludeExcludeTarget) → None

addIncludeTarget(self, target: IncludeExcludeTarget) → None

addInstrument(self, instrument: TargetedExperiment_Instrument) → None

addPeptide(self, rhs: Peptide) → None

addProtein(self, protein: Protein) → None

addPublication(self, publication: Publication) → None

addSoftware(self, software: Software) → None

addSourceFile(self, source_file: SourceFile) → None

addTargetCVTerm(self, cv_term: CVTerm) → None

addTransition(self, transition: ReactionMonitoringTransition) → None

clear(self, clear_meta_data: bool) → None

containsInvalidReferences(self) → bool

getCVs(self) → List[CV]

getCompoundByRef(self, ref: Union[bytes, str, String]) → Compound

getCompounds(self) → List[Compound]

getContacts(self) → List[Contact]

getExcludeTargets(self) → List[IncludeExcludeTarget]

getIncludeTargets(self) → List[IncludeExcludeTarget]

getInstruments(self) → List[TargetedExperiment_Instrument]

getPeptideByRef(self, ref: Union[bytes, str, String]) → Peptide

getPeptides(self) → List[Peptide]

getProteinByRef(self, ref: Union[bytes, str, String]) → Protein

getProteins(self) → List[Protein]

getPublications(self) → List[Publication]

getSoftware(self) → List[Software]

getSourceFiles(self) → List[SourceFile]

getTargetCVTerms(self) → CVTermList

getTransitions(self) → List[ReactionMonitoringTransition]

hasCompound(self, ref: Union[bytes, str, String]) → bool

hasPeptide(self, ref: Union[bytes, str, String]) → bool

hasProtein(self, ref: Union[bytes, str, String]) → bool

setCVs(self, cvs: List[CV]) → None

setCompounds(self, rhs: List[Compound]) → None

setContacts(self, contacts: List[Contact]) → None

setExcludeTargets(self, targets: List[IncludeExcludeTarget]) → None

setIncludeTargets(self, targets: List[IncludeExcludeTarget]) → None

setInstruments(self, instruments: List[TargetedExperiment_Instrument]) → None

setPeptides(self, rhs: List[Peptide]) → None

setProteins(self, proteins: List[Protein]) → None

setPublications(self, publications: List[Publication]) → None

setSoftware(self, software: List[Software]) → None

setSourceFiles(self, source_files: List[SourceFile]) → None

setTargetCVTerms(self, cv_terms: CVTermList) → None

setTargetMetaValue(self, name: Union[bytes, str, String], value: Union[int, float, bytes, str, List[int], List[float], List[bytes]]) → None

setTransitions(self, transitions: List[ReactionMonitoringTransition]) → None

sortTransitionsByProductMZ(self) → None