PeptideIdentification

class pyopenms.PeptideIdentification

Bases: object

Cython implementation of _PeptideIdentification

Original C++ documentation is available here

– Inherits from [‘MetaInfoInterface’]

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: PeptideIdentification) → None

Methods

__init__	Overload:
assignRanks(self)
clearMetaInfo(self)	Removes all meta values
empty(self)
getBaseName(self)
getExperimentLabel(self)
getHits(self)	Returns the peptide hits as const
getIdentifier(self)
getKeys(self, keys)	Fills the given vector with a list of all keys for which a value is set
getMZ(self)
getMetaValue(self, in_0)	Returns the value corresponding to a string, or
getRT(self)
getReferencingHits(self, in_0, in_1)	Returns all peptide hits which reference to a given protein accession (i.e.
getScoreType(self)
getSignificanceThreshold(self)	Returns the peptide significance threshold value
hasMZ(self)
hasRT(self)
insertHit(self, in_0)	Appends a peptide hit
isHigherScoreBetter(self)
isMetaEmpty(self)	Returns if the MetaInfo is empty
metaRegistry(self)	Returns a reference to the MetaInfoRegistry
metaValueExists(self, in_0)	Returns whether an entry with the given name exists
removeMetaValue(self, in_0)	Removes the DataValue corresponding to name if it exists
setBaseName(self, in_0)
setExperimentLabel(self, in_0)
setHigherScoreBetter(self, in_0)
setHits(self, in_0)	Sets the peptide hits
setIdentifier(self, in_0)
setMZ(self, in_0)
setMetaValue(self, in_0, in_1)	Sets the DataValue corresponding to a name
setRT(self, in_0)
setScoreType(self, in_0)
setSignificanceThreshold(self, value)	Setting of the peptide significance threshold value
sort(self)
sortByRank(self)

assignRanks(self) → None

clearMetaInfo(self) → None

Removes all meta values

empty(self) → bool

getBaseName(self) → Union[bytes, str, String]

getExperimentLabel(self) → Union[bytes, str, String]

getHits(self) → List[PeptideHit]

Returns the peptide hits as const

getIdentifier(self) → Union[bytes, str, String]

getKeys(self, keys: List[bytes]) → None

Fills the given vector with a list of all keys for which a value is set

getMZ(self) → float

getMetaValue(self, in_0: Union[bytes, str, String]) → Union[int, float, bytes, str, List[int], List[float], List[bytes]]

Returns the value corresponding to a string, or

getRT(self) → float

getReferencingHits(self, in_0: List[PeptideHit], in_1: Set[bytes]) → List[PeptideHit]

Returns all peptide hits which reference to a given protein accession (i.e. filter by protein accession)

getScoreType(self) → Union[bytes, str, String]

getSignificanceThreshold(self) → float

Returns the peptide significance threshold value

hasMZ(self) → bool

hasRT(self) → bool

insertHit(self, in_0: PeptideHit) → None

Appends a peptide hit

isHigherScoreBetter(self) → bool

isMetaEmpty(self) → bool

Returns if the MetaInfo is empty

metaRegistry(self) → MetaInfoRegistry

Returns a reference to the MetaInfoRegistry

metaValueExists(self, in_0: Union[bytes, str, String]) → bool

Returns whether an entry with the given name exists

removeMetaValue(self, in_0: Union[bytes, str, String]) → None

Removes the DataValue corresponding to name if it exists

setBaseName(self, in_0: Union[bytes, str, String]) → None

setExperimentLabel(self, in_0: Union[bytes, str, String]) → None

setHigherScoreBetter(self, in_0: bool) → None

setHits(self, in_0: List[PeptideHit]) → None

Sets the peptide hits

setIdentifier(self, in_0: Union[bytes, str, String]) → None

setMZ(self, in_0: float) → None

setMetaValue(self, in_0: Union[bytes, str, String], in_1: Union[int, float, bytes, str, List[int], List[float], List[bytes]]) → None

Sets the DataValue corresponding to a name

setRT(self, in_0: float) → None

setScoreType(self, in_0: Union[bytes, str, String]) → None

setSignificanceThreshold(self, value: float) → None

Setting of the peptide significance threshold value

sort(self) → None

sortByRank(self) → None