FeatureFindingMetabo

class pyopenms.FeatureFindingMetabo

Bases: object

Cython implementation of _FeatureFindingMetabo

Original C++ documentation is available here: – Inherits from [‘ProgressLogger’, ‘DefaultParamHandler’]

__init__()

Overload:

__init__(self) → None

Method for the assembly of mass traces belonging to the same isotope pattern, i.e., that are compatible in retention times, mass-to-charge ratios, and isotope abundances

Overload:

__init__(self, in_0: FeatureFindingMetabo) → None

Methods

`__init__`	Overload:
`endProgress`(self)	Ends the progress display
`getDefaults`(self)	Returns the default parameters
`getLogType`(self)	Returns the type of progress log being used
`getName`(self)	Returns the name
`getParameters`(self)	Returns the parameters
`getSubsections`(self)
`nextProgress`(self)	Increment progress by 1 (according to range begin-end)
`run`(self, input_mtraces, output_featmap, ...)
`setLogType`(self, in_0)	Sets the progress log that should be used.
`setName`(self, in_0)	Sets the name
`setParameters`(self, param)	Sets the parameters
`setProgress`(self, value)	Sets the current progress
`startProgress`(self, begin, end, label)

endProgress(self) → None: Ends the progress display

getDefaults(self) → Param: Returns the default parameters

getLogType(self) → int: Returns the type of progress log being used

getName(self) → Union[bytes, str, String]: Returns the name

getParameters(self) → Param: Returns the parameters

getSubsections(self) → List[bytes]

nextProgress(self) → None: Increment progress by 1 (according to range begin-end)

run(self, input_mtraces: List[Kernel_MassTrace], output_featmap: FeatureMap, output_chromatograms: List[List[MSChromatogram]]) → None

setLogType(self, in_0: int) → None: Sets the progress log that should be used. The default type is NONE!

setName(self, in_0: Union[bytes, str, String]) → None: Sets the name

setParameters(self, param: Param) → None: Sets the parameters

setProgress(self, value: int) → None: Sets the current progress

startProgress(self, begin: int, end: int, label: Union[bytes, str, String]) → None