OpenSwath_Scores

class pyopenms.OpenSwath_Scores

Bases: object

Cython implementation of _OpenSwath_Scores

Original C++ documentation is available here

__init__(self) → None

Methods

`__init__`(self)
`calculate_lda_prescore`(self, scores)
`calculate_swath_lda_prescore`(self, scores)
`get_quick_lda_score`(self, library_corr_, ...)

Attributes

`bseries_score`
`dotprod_score_dia`
`elution_model_fit_score`
`intensity`
`isotope_correlation`
`isotope_overlap`
`library_corr`
`library_dotprod`
`library_manhattan`
`library_norm_manhattan`
`library_rootmeansquare`
`library_sangle`
`log_sn_score`
`manhatt_score_dia`
`massdev_score`
`mi_score`
`ms1_isotope_correlation`
`ms1_isotope_overlap`
`ms1_mi_combined_score`
`ms1_mi_contrast_score`
`ms1_mi_score`
`ms1_ppm_score`
`ms1_xcorr_coelution_combined_score`
`ms1_xcorr_coelution_contrast_score`
`ms1_xcorr_coelution_score`
`ms1_xcorr_shape_combined_score`
`ms1_xcorr_shape_contrast_score`
`ms1_xcorr_shape_score`
`norm_rt_score`
`normalized_experimental_rt`
`nr_peaks`
`raw_rt_score`
`rt_difference`
`sn_ratio`
`sonar_diff`
`sonar_lag`
`sonar_rsq`
`sonar_shape`
`sonar_sn`
`sonar_trend`
`total_xic`
`weighted_coelution_score`
`weighted_massdev_score`
`weighted_mi_score`
`weighted_xcorr_shape`
`xcorr_coelution_score`
`xcorr_shape_score`
`yseries_score`

bseries_score

calculate_lda_prescore(self, scores: OpenSwath_Scores) → float

calculate_swath_lda_prescore(self, scores: OpenSwath_Scores) → float

dotprod_score_dia

elution_model_fit_score

get_quick_lda_score(self, library_corr_: float, library_norm_manhattan_: float, norm_rt_score_: float, xcorr_coelution_score_: float, xcorr_shape_score_: float, log_sn_score_: float) → float

intensity

isotope_correlation

isotope_overlap

library_corr

library_dotprod

library_manhattan

library_norm_manhattan

library_rootmeansquare

library_sangle

log_sn_score

manhatt_score_dia

massdev_score

mi_score

ms1_isotope_correlation

ms1_isotope_overlap

ms1_mi_combined_score

ms1_mi_contrast_score

ms1_mi_score

ms1_ppm_score

ms1_xcorr_coelution_combined_score

ms1_xcorr_coelution_contrast_score

ms1_xcorr_coelution_score

ms1_xcorr_shape_combined_score

ms1_xcorr_shape_contrast_score

ms1_xcorr_shape_score

norm_rt_score

normalized_experimental_rt

nr_peaks

raw_rt_score

rt_difference

sn_ratio

sonar_diff

sonar_lag

sonar_rsq

sonar_shape

sonar_sn

sonar_trend

total_xic

weighted_coelution_score

weighted_massdev_score

weighted_mi_score

weighted_xcorr_shape

xcorr_coelution_score

xcorr_shape_score

yseries_score