AAIndex#

class pyopenms.AAIndex#

Bases: object

Cython implementation of _AAIndex

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1AAIndex.html

__init__()#

Methods

__init__()

acidic

Cython signature: double acidic(char aa)

aliphatic

Cython signature: double aliphatic(char aa)

basic

Cython signature: double basic(char aa)

calculateGB

Cython signature: double calculateGB(AASequence & seq, double T)

getARGP820102

Cython signature: double getARGP820102(char aa)

getFAUJ880111

Cython signature: double getFAUJ880111(char aa)

getFINA770101

Cython signature: double getFINA770101(char aa)

getKHAG800101

Cython signature: double getKHAG800101(char aa)

getNADH010106

Cython signature: double getNADH010106(char aa)

getNADH010107

Cython signature: double getNADH010107(char aa)

getOOBM850104

Cython signature: double getOOBM850104(char aa)

getROBB760107

Cython signature: double getROBB760107(char aa)

getVASM830103

Cython signature: double getVASM830103(char aa)

getWILM950102

Cython signature: double getWILM950102(char aa)

polar

Cython signature: double polar(char aa)
acidic()#

Cython signature: double acidic(char aa)

aliphatic()#

Cython signature: double aliphatic(char aa)

basic()#

Cython signature: double basic(char aa)

calculateGB()#

Cython signature: double calculateGB(AASequence & seq, double T)

getARGP820102()#

Cython signature: double getARGP820102(char aa)

getFAUJ880111()#

Cython signature: double getFAUJ880111(char aa)

getFINA770101()#

Cython signature: double getFINA770101(char aa)

getKHAG800101()#

Cython signature: double getKHAG800101(char aa)

getNADH010106()#

Cython signature: double getNADH010106(char aa)

getNADH010107()#

Cython signature: double getNADH010107(char aa)

getOOBM850104()#

Cython signature: double getOOBM850104(char aa)

getROBB760107()#

Cython signature: double getROBB760107(char aa)

getVASM830103()#

Cython signature: double getVASM830103(char aa)

getWILM950102()#

Cython signature: double getWILM950102(char aa)

polar()#

Cython signature: double polar(char aa)