DIAScoring#

class pyopenms.DIAScoring#

Bases: object

Cython implementation of _DIAScoring

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1DIAScoring.html: – Inherits from [‘DefaultParamHandler’]

__init__()#: Cython signature: void DIAScoring()

Methods

`__init__`	Cython signature: void DIAScoring()
`dia_by_ion_score`
`dia_ms1_isotope_scores`	Cython signature: void dia_ms1_isotope_scores(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & isotope_corr, double & isotope_overlap, EmpiricalFormula & sum_formula)
`dia_ms1_isotope_scores_averagine`	Cython signature: void dia_ms1_isotope_scores_averagine(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & isotope_corr, double & isotope_overlap, int charge_state)
`dia_ms1_massdiff_score`	Cython signature: bool dia_ms1_massdiff_score(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & ppm_score)
`getDefaults`	Cython signature: Param getDefaults() Returns the default parameters
`getName`	Cython signature: String getName() Returns the name
`getParameters`	Cython signature: Param getParameters() Returns the parameters
`getSubsections`	Cython signature: libcpp_vector[String] getSubsections()
`score_with_isotopes`	Cython signature: void score_with_isotopes(shared_ptr[OSSpectrum] spectrum, libcpp_vector[LightTransition] transitions, double & dotprod, double & manhattan)
`setName`	Cython signature: void setName(const String &) Sets the name
`setParameters`	Cython signature: void setParameters(Param & param) Sets the parameters

dia_by_ion_score()#

dia_ms1_isotope_scores()#: Cython signature: void dia_ms1_isotope_scores(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & isotope_corr, double & isotope_overlap, EmpiricalFormula & sum_formula)

dia_ms1_isotope_scores_averagine()#: Cython signature: void dia_ms1_isotope_scores_averagine(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & isotope_corr, double & isotope_overlap, int charge_state)

dia_ms1_massdiff_score()#: Cython signature: bool dia_ms1_massdiff_score(double precursor_mz, shared_ptr[OSSpectrum] spectrum, double & ppm_score)

getDefaults()#: Cython signature: Param getDefaults() Returns the default parameters

getName()#: Cython signature: String getName() Returns the name

getParameters()#: Cython signature: Param getParameters() Returns the parameters

getSubsections()#: Cython signature: libcpp_vector[String] getSubsections()

score_with_isotopes()#: Cython signature: void score_with_isotopes(shared_ptr[OSSpectrum] spectrum, libcpp_vector[LightTransition] transitions, double & dotprod, double & manhattan)

setName()#: Cython signature: void setName(const String &) Sets the name

setParameters()#: Cython signature: void setParameters(Param & param) Sets the parameters