OptimizePeakDeconvolution#

class pyopenms.OptimizePeakDeconvolution#

Bases: object

Cython implementation of _OptimizePeakDeconvolution

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1OptimizePeakDeconvolution.html: – Inherits from [‘DefaultParamHandler’]

__init__()#

Cython signature: void OptimizePeakDeconvolution()
Cython signature: void OptimizePeakDeconvolution(OptimizePeakDeconvolution &)

Methods

`__init__`	Cython signature: void OptimizePeakDeconvolution()
`getCharge`	Cython signature: int getCharge() Returns the charge
`getDefaults`	Cython signature: Param getDefaults() Returns the default parameters
`getName`	Cython signature: String getName() Returns the name
`getNumberOfPeaks_`	Cython signature: size_t getNumberOfPeaks_(int charge, libcpp_vector[PeakShape] & temp_shapes, OptimizePeakDeconvolution_Data & data)
`getParameters`	Cython signature: Param getParameters() Returns the parameters
`getPenalties`	Cython signature: PenaltyFactorsIntensity getPenalties() Returns the penalty parameter
`getSubsections`	Cython signature: libcpp_vector[String] getSubsections()
`optimize`	Cython signature: bool optimize(libcpp_vector[PeakShape] & peaks, OptimizePeakDeconvolution_Data & data) Performs a nonlinear optimization of the peaks that belong to the current isotope pattern
`setCharge`	Cython signature: void setCharge(int charge) Sets the charge
`setName`	Cython signature: void setName(const String &) Sets the name
`setParameters`	Cython signature: void setParameters(Param & param) Sets the parameters
`setPenalties`	Cython signature: void setPenalties(PenaltyFactorsIntensity & penalties) Sets the penalty parameter

getCharge()#: Cython signature: int getCharge() Returns the charge

getDefaults()#: Cython signature: Param getDefaults() Returns the default parameters

getName()#: Cython signature: String getName() Returns the name

getNumberOfPeaks_()#: Cython signature: size_t getNumberOfPeaks_(int charge, libcpp_vector[PeakShape] & temp_shapes, OptimizePeakDeconvolution_Data & data)

getParameters()#: Cython signature: Param getParameters() Returns the parameters

getPenalties()#: Cython signature: PenaltyFactorsIntensity getPenalties() Returns the penalty parameter

getSubsections()#: Cython signature: libcpp_vector[String] getSubsections()

optimize()#: Cython signature: bool optimize(libcpp_vector[PeakShape] & peaks, OptimizePeakDeconvolution_Data & data) Performs a nonlinear optimization of the peaks that belong to the current isotope pattern

setCharge()#: Cython signature: void setCharge(int charge) Sets the charge

setName()#: Cython signature: void setName(const String &) Sets the name

setParameters()#: Cython signature: void setParameters(Param & param) Sets the parameters

setPenalties()#: Cython signature: void setPenalties(PenaltyFactorsIntensity & penalties) Sets the penalty parameter