PeptideIndexing#

class pyopenms.PeptideIndexing#

Bases: object

Cython implementation of _PeptideIndexing

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PeptideIndexing.html: – Inherits from [‘DefaultParamHandler’]

__init__()#

Cython signature: void PeptideIndexing()
Cython signature: void PeptideIndexing(PeptideIndexing &)

Methods

`__init__`	Cython signature: void PeptideIndexing()
`getDecoyString`	Cython signature: String getDecoyString()
`getDefaults`	Cython signature: Param getDefaults() Returns the default parameters
`getName`	Cython signature: String getName() Returns the name
`getParameters`	Cython signature: Param getParameters() Returns the parameters
`getSubsections`	Cython signature: libcpp_vector[String] getSubsections()
`isPrefix`	Cython signature: bool isPrefix()
`run`	Cython signature: PeptideIndexing_ExitCodes run(libcpp_vector[FASTAEntry] & proteins, libcpp_vector[ProteinIdentification] & prot_ids, libcpp_vector[PeptideIdentification] & pep_ids)
`setName`	Cython signature: void setName(const String &) Sets the name
`setParameters`	Cython signature: void setParameters(Param & param) Sets the parameters

PeptideIndexing_ExitCodes#: alias of pyopenms.pyopenms_5.__PeptideIndexing_ExitCodes

getDecoyString()#: Cython signature: String getDecoyString()

getDefaults()#: Cython signature: Param getDefaults() Returns the default parameters

getName()#: Cython signature: String getName() Returns the name

getParameters()#: Cython signature: Param getParameters() Returns the parameters

getSubsections()#: Cython signature: libcpp_vector[String] getSubsections()

isPrefix()#: Cython signature: bool isPrefix()

run()#: Cython signature: PeptideIndexing_ExitCodes run(libcpp_vector[FASTAEntry] & proteins, libcpp_vector[ProteinIdentification] & prot_ids, libcpp_vector[PeptideIdentification] & pep_ids)

setName()#: Cython signature: void setName(const String &) Sets the name

setParameters()#: Cython signature: void setParameters(Param & param) Sets the parameters