ProteaseDB

class pyopenms.ProteaseDB

Bases: object

Cython implementation of _ProteaseDB

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1ProteaseDB.html

__init__(*args, **kwargs)

Methods

__init__(*args, **kwargs)
getAllCometNames	Cython signature: void getAllCometNames(libcpp_vector[String] & all_names) Returns all the enzyme names available for Comet
getAllCruxNames	Cython signature: void getAllCruxNames(libcpp_vector[String] & all_names) Returns all the enzyme names available for Crux
getAllMSGFNames	Cython signature: void getAllMSGFNames(libcpp_vector[String] & all_names) Returns all the enzyme names available for MSGFPlus
getAllNames	Cython signature: void getAllNames(libcpp_vector[String] & all_names)
getAllOMSSANames	Cython signature: void getAllOMSSANames(libcpp_vector[String] & all_names) Returns all the enzyme names available for OMSSA
getAllXTandemNames	Cython signature: void getAllXTandemNames(libcpp_vector[String] & all_names) Returns all the enzyme names available for XTandem
getEnzyme	Cython signature: const DigestionEnzymeProtein * getEnzyme(const String & name)
getEnzymeByRegEx	Cython signature: const DigestionEnzymeProtein * getEnzymeByRegEx(const String & cleavage_regex)
hasEnzyme	Cython signature: bool hasEnzyme(const String & name)
hasRegEx	Cython signature: bool hasRegEx(const String & cleavage_regex)

getAllCometNames()

Cython signature: void getAllCometNames(libcpp_vector[String] & all_names) Returns all the enzyme names available for Comet

getAllCruxNames()

Cython signature: void getAllCruxNames(libcpp_vector[String] & all_names) Returns all the enzyme names available for Crux

getAllMSGFNames()

Cython signature: void getAllMSGFNames(libcpp_vector[String] & all_names) Returns all the enzyme names available for MSGFPlus

getAllNames()

Cython signature: void getAllNames(libcpp_vector[String] & all_names)

getAllOMSSANames()

Cython signature: void getAllOMSSANames(libcpp_vector[String] & all_names) Returns all the enzyme names available for OMSSA

getAllXTandemNames()

Cython signature: void getAllXTandemNames(libcpp_vector[String] & all_names) Returns all the enzyme names available for XTandem

getEnzyme()

Cython signature: const DigestionEnzymeProtein * getEnzyme(const String & name)

getEnzymeByRegEx()

Cython signature: const DigestionEnzymeProtein * getEnzymeByRegEx(const String & cleavage_regex)

hasEnzyme()

Cython signature: bool hasEnzyme(const String & name)

hasRegEx()

Cython signature: bool hasRegEx(const String & cleavage_regex)