Ribonucleotide#

class pyopenms.Ribonucleotide#

Bases: object

Cython implementation of _Ribonucleotide

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS::Ribonucleotide_1_1Ribonucleotide.html

__init__()#

Cython signature: void Ribonucleotide()
Cython signature: void Ribonucleotide(Ribonucleotide &)
Cython signature: void Ribonucleotide(String name, String code, String new_code, String html_code, EmpiricalFormula formula, char origin, double mono_mass, double avg_mass, TermSpecificityNuc term_spec, EmpiricalFormula baseloss_formula)

Methods

`__init__`	Cython signature: void Ribonucleotide()
`getAvgMass`	Cython signature: double getAvgMass() Returns average mass of the ribonucleotide
`getBaselossFormula`	Cython signature: EmpiricalFormula getBaselossFormula() Returns sum formula after loss of the nucleobase
`getCode`	Cython signature: String getCode() Returns the short name
`getFormula`	Cython signature: EmpiricalFormula getFormula() Returns the empirical formula of the residue
`getHTMLCode`	Cython signature: String getHTMLCode() Returns the HTML (RNAMods) code
`getMonoMass`	Cython signature: double getMonoMass() Returns monoisotopic mass of the ribonucleotide
`getName`	Cython signature: String getName() Returns the name of the ribonucleotide
`getNewCode`	Cython signature: String getNewCode() Returns the new code
`getOrigin`	Cython signature: char getOrigin() Returns the code of the unmodified base (e.g., "A", "C", ...)
`getTermSpecificity`	Cython signature: TermSpecificityNuc getTermSpecificity() Returns the terminal specificity
`isModified`	Cython signature: bool isModified() True if the ribonucleotide is a modified one
`setAvgMass`	Cython signature: void setAvgMass(double avg_mass) Sets average mass of the ribonucleotide
`setBaselossFormula`	Cython signature: void setBaselossFormula(EmpiricalFormula formula) Sets sum formula after loss of the nucleobase
`setCode`	Cython signature: void setCode(String code) Sets the short name
`setFormula`	Cython signature: void setFormula(EmpiricalFormula formula) Sets empirical formula of the ribonucleotide (must be full, with N and C-terminus)
`setHTMLCode`	Cython signature: void setHTMLCode(String html_code) Sets the HTML (RNAMods) code
`setMonoMass`	Cython signature: void setMonoMass(double mono_mass) Sets monoisotopic mass of the ribonucleotide
`setName`	Cython signature: void setName(String name) Sets the name of the ribonucleotide
`setNewCode`	Cython signature: void setNewCode(String code) Sets the new code
`setOrigin`	Cython signature: void setOrigin(char origin) Sets the code of the unmodified base (e.g., "A", "C", ...)
`setTermSpecificity`	Cython signature: void setTermSpecificity(TermSpecificityNuc term_spec) Sets the terminal specificity

getAvgMass()#: Cython signature: double getAvgMass() Returns average mass of the ribonucleotide

getBaselossFormula()#: Cython signature: EmpiricalFormula getBaselossFormula() Returns sum formula after loss of the nucleobase

getCode()#: Cython signature: String getCode() Returns the short name

getFormula()#: Cython signature: EmpiricalFormula getFormula() Returns the empirical formula of the residue

getHTMLCode()#: Cython signature: String getHTMLCode() Returns the HTML (RNAMods) code

getMonoMass()#: Cython signature: double getMonoMass() Returns monoisotopic mass of the ribonucleotide

getName()#: Cython signature: String getName() Returns the name of the ribonucleotide

getNewCode()#: Cython signature: String getNewCode() Returns the new code

getOrigin()#: Cython signature: char getOrigin() Returns the code of the unmodified base (e.g., “A”, “C”, …)

getTermSpecificity()#: Cython signature: TermSpecificityNuc getTermSpecificity() Returns the terminal specificity

isModified()#: Cython signature: bool isModified() True if the ribonucleotide is a modified one

setAvgMass()#: Cython signature: void setAvgMass(double avg_mass) Sets average mass of the ribonucleotide

setBaselossFormula()#: Cython signature: void setBaselossFormula(EmpiricalFormula formula) Sets sum formula after loss of the nucleobase

setCode()#: Cython signature: void setCode(String code) Sets the short name

setFormula()#: Cython signature: void setFormula(EmpiricalFormula formula) Sets empirical formula of the ribonucleotide (must be full, with N and C-terminus)

setHTMLCode()#: Cython signature: void setHTMLCode(String html_code) Sets the HTML (RNAMods) code

setMonoMass()#: Cython signature: void setMonoMass(double mono_mass) Sets monoisotopic mass of the ribonucleotide

setName()#: Cython signature: void setName(String name) Sets the name of the ribonucleotide

setNewCode()#: Cython signature: void setNewCode(String code) Sets the new code

setOrigin()#: Cython signature: void setOrigin(char origin) Sets the code of the unmodified base (e.g., “A”, “C”, …)

setTermSpecificity()#: Cython signature: void setTermSpecificity(TermSpecificityNuc term_spec) Sets the terminal specificity