MapAlignmentAlgorithmIdentification#

class pyopenms.MapAlignmentAlgorithmIdentification#

Bases: object

Cython implementation of _MapAlignmentAlgorithmIdentification

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1MapAlignmentAlgorithmIdentification.html: – Inherits from [‘DefaultParamHandler’, ‘ProgressLogger’]

__init__()#: Cython signature: void MapAlignmentAlgorithmIdentification()

Methods

`__init__`	Cython signature: void MapAlignmentAlgorithmIdentification()
`align`	Cython signature: void align(libcpp_vector[MSExperiment] &, libcpp_vector[TransformationDescription] &, int)
`align_4`	Parameters: ids (list): list of lists of PeptideIdentification objects trafos (list): list of TransformationDescription objects ref_index (int)
`endProgress`	Cython signature: void endProgress() Ends the progress display
`getDefaults`	Cython signature: Param getDefaults() Returns the default parameters
`getLogType`	Cython signature: LogType getLogType() Returns the type of progress log being used
`getName`	Cython signature: String getName() Returns the name
`getParameters`	Cython signature: Param getParameters() Returns the parameters
`getSubsections`	Cython signature: libcpp_vector[String] getSubsections()
`nextProgress`	Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)
`setLogType`	Cython signature: void setLogType(LogType) Sets the progress log that should be used.
`setName`	Cython signature: void setName(const String &) Sets the name
`setParameters`	Cython signature: void setParameters(Param & param) Sets the parameters
`setProgress`	Cython signature: void setProgress(ptrdiff_t value) Sets the current progress
`setReference`	Cython signature: void setReference(MSExperiment &)
`startProgress`	Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)

align()#

Cython signature: void align(libcpp_vector[MSExperiment] &, libcpp_vector[TransformationDescription] &, int)
Cython signature: void align(libcpp_vector[FeatureMap] &, libcpp_vector[TransformationDescription] &, int)
Cython signature: void align(libcpp_vector[ConsensusMap] &, libcpp_vector[TransformationDescription] &, int)

align_4()#: Parameters: ids (list): list of lists of PeptideIdentification objects trafos (list): list of TransformationDescription objects ref_index (int)

endProgress()#: Cython signature: void endProgress() Ends the progress display

getDefaults()#: Cython signature: Param getDefaults() Returns the default parameters

getLogType()#: Cython signature: LogType getLogType() Returns the type of progress log being used

getName()#: Cython signature: String getName() Returns the name

getParameters()#: Cython signature: Param getParameters() Returns the parameters

getSubsections()#: Cython signature: libcpp_vector[String] getSubsections()

nextProgress()#: Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)

setLogType()#: Cython signature: void setLogType(LogType) Sets the progress log that should be used. The default type is NONE!

setName()#: Cython signature: void setName(const String &) Sets the name

setParameters()#: Cython signature: void setParameters(Param & param) Sets the parameters

setProgress()#: Cython signature: void setProgress(ptrdiff_t value) Sets the current progress

setReference()#

Cython signature: void setReference(MSExperiment &)
Cython signature: void setReference(FeatureMap &)
Cython signature: void setReference(ConsensusMap &)
Cython signature: void setReference(libcpp_vector[PeptideIdentification] &)

startProgress()#: Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)