DigestionEnzymeProtein#

class pyopenms.DigestionEnzymeProtein#

Bases: object

Cython implementation of _DigestionEnzymeProtein

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1DigestionEnzymeProtein.html

– Inherits from [‘DigestionEnzyme’]

Representation of a digestion enzyme for proteins (protease)

__init__()#

Cython signature: void DigestionEnzymeProtein()
Cython signature: void DigestionEnzymeProtein(DigestionEnzymeProtein &)
Cython signature: void DigestionEnzymeProtein(String name, String cleavage_regex, libcpp_set[String] synonyms, String regex_description, EmpiricalFormula n_term_gain, EmpiricalFormula c_term_gain, String psi_id, String xtandem_id, unsigned int comet_id, unsigned int omssa_id)

Methods

`__init__`	Cython signature: void DigestionEnzymeProtein()
`addSynonym`	Cython signature: void addSynonym(const String & synonym) Adds a synonym
`getCTermGain`	Cython signature: EmpiricalFormula getCTermGain() Returns the C-term gain
`getCometID`	Cython signature: int getCometID() Returns the Comet enzyme ID
`getCruxID`	Cython signature: String getCruxID() Returns the Crux enzyme ID
`getMSGFID`	Cython signature: int getMSGFID() Returns the MSGFPlus enzyme id
`getNTermGain`	Cython signature: EmpiricalFormula getNTermGain() Returns the N-term gain
`getName`	Cython signature: String getName() Returns the name of the enzyme
`getOMSSAID`	Cython signature: int getOMSSAID() Returns the OMSSA enzyme ID
`getPSIID`	Cython signature: String getPSIID() Returns the PSI ID
`getRegEx`	Cython signature: String getRegEx() Returns the cleavage regex
`getRegExDescription`	Cython signature: String getRegExDescription() Returns the regex description
`getSynonyms`	Cython signature: libcpp_set[String] getSynonyms() Returns the synonyms
`getXTandemID`	Cython signature: String getXTandemID() Returns the X! Tandem enzyme ID
`setCTermGain`	Cython signature: void setCTermGain(EmpiricalFormula value) Sets the C-term gain
`setCometID`	Cython signature: void setCometID(int value) Sets the Comet enzyme ID
`setCruxID`	Cython signature: void setCruxID(const String & value) Sets the Crux enzyme ID
`setMSGFID`	Cython signature: void setMSGFID(int value) Sets the MSGFPlus enzyme id
`setNTermGain`	Cython signature: void setNTermGain(EmpiricalFormula value) Sets the N-term gain
`setName`	Cython signature: void setName(const String & name) Sets the name of the enzyme
`setOMSSAID`	Cython signature: void setOMSSAID(int value) Sets the OMSSA enzyme ID
`setPSIID`	Cython signature: void setPSIID(String value) Sets the PSI ID
`setRegEx`	Cython signature: void setRegEx(const String & cleavage_regex) Sets the cleavage regex
`setRegExDescription`	Cython signature: void setRegExDescription(const String & value) Sets the regex description
`setSynonyms`	Cython signature: void setSynonyms(libcpp_set[String] & synonyms) Sets the synonyms
`setValueFromFile`	Cython signature: bool setValueFromFile(String key, String value) Sets the value of a member variable based on an entry from an input file
`setXTandemID`	Cython signature: void setXTandemID(String value) Sets the X! Tandem enzyme ID

addSynonym()#: Cython signature: void addSynonym(const String & synonym) Adds a synonym

getCTermGain()#: Cython signature: EmpiricalFormula getCTermGain() Returns the C-term gain

getCometID()#: Cython signature: int getCometID() Returns the Comet enzyme ID

getCruxID()#: Cython signature: String getCruxID() Returns the Crux enzyme ID

getMSGFID()#: Cython signature: int getMSGFID() Returns the MSGFPlus enzyme id

getNTermGain()#: Cython signature: EmpiricalFormula getNTermGain() Returns the N-term gain

getName()#: Cython signature: String getName() Returns the name of the enzyme

getOMSSAID()#: Cython signature: int getOMSSAID() Returns the OMSSA enzyme ID

getPSIID()#: Cython signature: String getPSIID() Returns the PSI ID

getRegEx()#: Cython signature: String getRegEx() Returns the cleavage regex

getRegExDescription()#: Cython signature: String getRegExDescription() Returns the regex description

getSynonyms()#: Cython signature: libcpp_set[String] getSynonyms() Returns the synonyms

getXTandemID()#: Cython signature: String getXTandemID() Returns the X! Tandem enzyme ID

setCTermGain()#: Cython signature: void setCTermGain(EmpiricalFormula value) Sets the C-term gain

setCometID()#: Cython signature: void setCometID(int value) Sets the Comet enzyme ID

setCruxID()#: Cython signature: void setCruxID(const String & value) Sets the Crux enzyme ID

setMSGFID()#: Cython signature: void setMSGFID(int value) Sets the MSGFPlus enzyme id

setNTermGain()#: Cython signature: void setNTermGain(EmpiricalFormula value) Sets the N-term gain

setName()#: Cython signature: void setName(const String & name) Sets the name of the enzyme

setOMSSAID()#: Cython signature: void setOMSSAID(int value) Sets the OMSSA enzyme ID

setPSIID()#: Cython signature: void setPSIID(String value) Sets the PSI ID

setRegEx()#: Cython signature: void setRegEx(const String & cleavage_regex) Sets the cleavage regex

setRegExDescription()#: Cython signature: void setRegExDescription(const String & value) Sets the regex description

setSynonyms()#: Cython signature: void setSynonyms(libcpp_set[String] & synonyms) Sets the synonyms

setValueFromFile()#: Cython signature: bool setValueFromFile(String key, String value) Sets the value of a member variable based on an entry from an input file

setXTandemID()#: Cython signature: void setXTandemID(String value) Sets the X! Tandem enzyme ID