SiriusFragmentAnnotation#

class pyopenms.SiriusFragmentAnnotation#

Bases: object

Cython implementation of _SiriusFragmentAnnotation

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1SiriusFragmentAnnotation.html

__init__()#

  • Cython signature: void SiriusFragmentAnnotation()

  • Cython signature: void SiriusFragmentAnnotation(SiriusFragmentAnnotation &)

Methods

__init__

  • Cython signature: void SiriusFragmentAnnotation()

extractAndResolveSiriusAnnotations

Cython signature: libcpp_vector[SiriusFragmentAnnotation_SiriusTargetDecoySpectra] extractAndResolveSiriusAnnotations(libcpp_vector[String] & sirius_workspace_subdirs, double score_threshold, bool use_exact_mass)

extractAnnotationsFromSiriusFile

Cython signature: libcpp_vector[MSSpectrum] extractAnnotationsFromSiriusFile(String & path_to_sirius_workspace, size_t max_rank, bool decoy, bool use_exact_mass)

extractSiriusAnnotationsTgtOnly

Cython signature: libcpp_vector[MSSpectrum] extractSiriusAnnotationsTgtOnly(libcpp_vector[String] & sirius_workspace_subdirs, double score_threshold, bool use_exact_mass, bool resolve)
extractAndResolveSiriusAnnotations()#

Cython signature: libcpp_vector[SiriusFragmentAnnotation_SiriusTargetDecoySpectra] extractAndResolveSiriusAnnotations(libcpp_vector[String] & sirius_workspace_subdirs, double score_threshold, bool use_exact_mass)

extractAnnotationsFromSiriusFile()#

Cython signature: libcpp_vector[MSSpectrum] extractAnnotationsFromSiriusFile(String & path_to_sirius_workspace, size_t max_rank, bool decoy, bool use_exact_mass)

extractSiriusAnnotationsTgtOnly()#

Cython signature: libcpp_vector[MSSpectrum] extractSiriusAnnotationsTgtOnly(libcpp_vector[String] & sirius_workspace_subdirs, double score_threshold, bool use_exact_mass, bool resolve)