PeakIntegrator#

class pyopenms.PeakIntegrator#

Bases: object

Cython implementation of _PeakIntegrator

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PeakIntegrator.html

– Inherits from [‘DefaultParamHandler’]

__init__()#

  • Cython signature: void PeakIntegrator()

  • Cython signature: void PeakIntegrator(PeakIntegrator &)

Methods

__init__

  • Cython signature: void PeakIntegrator()

calculatePeakShapeMetrics

  • Cython signature: PI_PeakShapeMetrics calculatePeakShapeMetrics(MSChromatogram & chromatogram, double left, double right, double peak_height, double peak_apex_pos)

estimateBackground

  • Cython signature: PI_PeakBackground estimateBackground(MSChromatogram & chromatogram, double left, double right, double peak_apex_pos)

getDefaultParameters

Cython signature: void getDefaultParameters(Param)

getDefaults

Cython signature: Param getDefaults() Returns the default parameters

getName

Cython signature: String getName() Returns the name

getParameters

Cython signature: Param getParameters() Returns the parameters

getSubsections

Cython signature: libcpp_vector[String] getSubsections()

integratePeak

  • Cython signature: PI_PeakArea integratePeak(MSChromatogram & chromatogram, double left, double right)

setName

Cython signature: void setName(const String &) Sets the name

setParameters

Cython signature: void setParameters(Param & param) Sets the parameters
calculatePeakShapeMetrics()#

  • Cython signature: PI_PeakShapeMetrics calculatePeakShapeMetrics(MSChromatogram & chromatogram, double left, double right, double peak_height, double peak_apex_pos)

  • Cython signature: PI_PeakShapeMetrics calculatePeakShapeMetrics(MSSpectrum & spectrum, double left, double right, double peak_height, double peak_apex_pos)

estimateBackground()#

  • Cython signature: PI_PeakBackground estimateBackground(MSChromatogram & chromatogram, double left, double right, double peak_apex_pos)

  • Cython signature: PI_PeakBackground estimateBackground(MSSpectrum & spectrum, double left, double right, double peak_apex_pos)

getDefaultParameters()#

Cython signature: void getDefaultParameters(Param)

getDefaults()#

Cython signature: Param getDefaults() Returns the default parameters

getName()#

Cython signature: String getName() Returns the name

getParameters()#

Cython signature: Param getParameters() Returns the parameters

getSubsections()#

Cython signature: libcpp_vector[String] getSubsections()

integratePeak()#

  • Cython signature: PI_PeakArea integratePeak(MSChromatogram & chromatogram, double left, double right)

  • Cython signature: PI_PeakArea integratePeak(MSSpectrum & spectrum, double left, double right)

setName()#

Cython signature: void setName(const String &) Sets the name

setParameters()#

Cython signature: void setParameters(Param & param) Sets the parameters