TargetedSpectraExtractor#

class pyopenms.TargetedSpectraExtractor#

Bases: object

Cython implementation of _TargetedSpectraExtractor

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1TargetedSpectraExtractor.html: – Inherits from [‘DefaultParamHandler’]

__init__()#

Cython signature: void TargetedSpectraExtractor()
Cython signature: void TargetedSpectraExtractor(TargetedSpectraExtractor &)

Methods

`__init__`	Cython signature: void TargetedSpectraExtractor()
`annotateSpectra`	Cython signature: void annotateSpectra(libcpp_vector[MSSpectrum] &, TargetedExperiment &, libcpp_vector[MSSpectrum] &, FeatureMap &)
`extractSpectra`	Cython signature: void extractSpectra(MSExperiment &, TargetedExperiment &, libcpp_vector[MSSpectrum] &, FeatureMap &)
`getDefaultParameters`	Cython signature: void getDefaultParameters(Param &)
`getDefaults`	Cython signature: Param getDefaults() Returns the default parameters
`getName`	Cython signature: String getName() Returns the name
`getParameters`	Cython signature: Param getParameters() Returns the parameters
`getSubsections`	Cython signature: libcpp_vector[String] getSubsections()
`mergeFeatures`	Cython signature: void mergeFeatures(FeatureMap &, FeatureMap &)
`pickSpectrum`	Cython signature: void pickSpectrum(MSSpectrum &, MSSpectrum &)
`scoreSpectra`	Cython signature: void scoreSpectra(libcpp_vector[MSSpectrum] &, libcpp_vector[MSSpectrum] &, FeatureMap &, libcpp_vector[MSSpectrum] &)
`searchSpectrum`	Cython signature: void searchSpectrum(FeatureMap &, FeatureMap &)
`selectSpectra`	Cython signature: void selectSpectra(libcpp_vector[MSSpectrum] &, FeatureMap &, libcpp_vector[MSSpectrum] &, FeatureMap &)
`setName`	Cython signature: void setName(const String &) Sets the name
`setParameters`	Cython signature: void setParameters(Param & param) Sets the parameters
`storeSpectraMSP`	Cython signature: void storeSpectraMSP(const String &, MSExperiment &)
`storeSpectraTraML`	Cython signature: void storeSpectraTraML(const String &, FeatureMap &, FeatureMap &)

annotateSpectra()#

Cython signature: void annotateSpectra(libcpp_vector[MSSpectrum] &, TargetedExperiment &, libcpp_vector[MSSpectrum] &, FeatureMap &)
Cython signature: void annotateSpectra(libcpp_vector[MSSpectrum] &, TargetedExperiment &, libcpp_vector[MSSpectrum] &)
Cython signature: void annotateSpectra(libcpp_vector[MSSpectrum] &, FeatureMap &, FeatureMap &, libcpp_vector[MSSpectrum] &)

extractSpectra()#

Cython signature: void extractSpectra(MSExperiment &, TargetedExperiment &, libcpp_vector[MSSpectrum] &, FeatureMap &)
Cython signature: void extractSpectra(MSExperiment &, TargetedExperiment &, libcpp_vector[MSSpectrum] &)

getDefaultParameters()#: Cython signature: void getDefaultParameters(Param &)

getDefaults()#: Cython signature: Param getDefaults() Returns the default parameters

getName()#: Cython signature: String getName() Returns the name

getParameters()#: Cython signature: Param getParameters() Returns the parameters

getSubsections()#: Cython signature: libcpp_vector[String] getSubsections()

mergeFeatures()#: Cython signature: void mergeFeatures(FeatureMap &, FeatureMap &)

pickSpectrum()#: Cython signature: void pickSpectrum(MSSpectrum &, MSSpectrum &)

scoreSpectra()#

Cython signature: void scoreSpectra(libcpp_vector[MSSpectrum] &, libcpp_vector[MSSpectrum] &, FeatureMap &, libcpp_vector[MSSpectrum] &)
Cython signature: void scoreSpectra(libcpp_vector[MSSpectrum] &, libcpp_vector[MSSpectrum] &, libcpp_vector[MSSpectrum] &)

searchSpectrum()#: Cython signature: void searchSpectrum(FeatureMap &, FeatureMap &)

selectSpectra()#

Cython signature: void selectSpectra(libcpp_vector[MSSpectrum] &, FeatureMap &, libcpp_vector[MSSpectrum] &, FeatureMap &)
Cython signature: void selectSpectra(libcpp_vector[MSSpectrum] &, libcpp_vector[MSSpectrum] &)

setName()#: Cython signature: void setName(const String &) Sets the name

setParameters()#: Cython signature: void setParameters(Param & param) Sets the parameters

storeSpectraMSP()#: Cython signature: void storeSpectraMSP(const String &, MSExperiment &)

storeSpectraTraML()#: Cython signature: void storeSpectraTraML(const String &, FeatureMap &, FeatureMap &)