OfflinePrecursorIonSelection#

class pyopenms.OfflinePrecursorIonSelection#

Bases: object

Cython implementation of _OfflinePrecursorIonSelection

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1OfflinePrecursorIonSelection.html

– Inherits from [‘DefaultParamHandler’]

__init__()#

  • Cython signature: void OfflinePrecursorIonSelection()

  • Cython signature: void OfflinePrecursorIonSelection(OfflinePrecursorIonSelection &)

Methods

__init__

  • Cython signature: void OfflinePrecursorIonSelection()

createProteinSequenceBasedLPInclusionList

Cython signature: void createProteinSequenceBasedLPInclusionList(String include_, String rt_model_file, String pt_model_file, FeatureMap & precursors)

getDefaults

Cython signature: Param getDefaults() Returns the default parameters

getLPSolver

Cython signature: SOLVER getLPSolver()

getName

Cython signature: String getName() Returns the name

getParameters

Cython signature: Param getParameters() Returns the parameters

getSubsections

Cython signature: libcpp_vector[String] getSubsections()

makePrecursorSelectionForKnownLCMSMap

Cython signature: void makePrecursorSelectionForKnownLCMSMap(FeatureMap & features, MSExperiment & experiment, MSExperiment & ms2, libcpp_set[int] & charges_set, bool feature_based)

setLPSolver

Cython signature: void setLPSolver(SOLVER solver)

setName

Cython signature: void setName(const String &) Sets the name

setParameters

Cython signature: void setParameters(Param & param) Sets the parameters
createProteinSequenceBasedLPInclusionList()#

Cython signature: void createProteinSequenceBasedLPInclusionList(String include_, String rt_model_file, String pt_model_file, FeatureMap & precursors)

getDefaults()#

Cython signature: Param getDefaults() Returns the default parameters

getLPSolver()#

Cython signature: SOLVER getLPSolver()

getName()#

Cython signature: String getName() Returns the name

getParameters()#

Cython signature: Param getParameters() Returns the parameters

getSubsections()#

Cython signature: libcpp_vector[String] getSubsections()

makePrecursorSelectionForKnownLCMSMap()#

Cython signature: void makePrecursorSelectionForKnownLCMSMap(FeatureMap & features, MSExperiment & experiment, MSExperiment & ms2, libcpp_set[int] & charges_set, bool feature_based)

Parameters

  • features – Input feature map

  • experiment – Input raw data

  • ms2 – Precursors are added as empty MS2 spectra to this MSExperiment

  • charges_set – Allowed charge states

  • feature_based – If true the selection is feature based, if false it is scan based and the highest signals in each spectrum are chosen

setLPSolver()#

Cython signature: void setLPSolver(SOLVER solver)

setName()#

Cython signature: void setName(const String &) Sets the name

setParameters()#

Cython signature: void setParameters(Param & param) Sets the parameters