TransitionPQPFile#

class pyopenms.TransitionPQPFile#

Bases: object

Cython implementation of _TransitionPQPFile

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1TransitionPQPFile.html

__init__()#

  • Cython signature: void TransitionPQPFile()

  • Cython signature: void TransitionPQPFile(TransitionPQPFile &)

Methods

__init__

  • Cython signature: void TransitionPQPFile()

convertPQPToTargetedExperiment

  • Cython signature: void convertPQPToTargetedExperiment(char * filename, TargetedExperiment & targeted_exp, bool legacy_traml_id)

convertTSVToTargetedExperiment

  • Cython signature: void convertTSVToTargetedExperiment(char * filename, FileType filetype, TargetedExperiment & targeted_exp)

convertTargetedExperimentToPQP

Cython signature: void convertTargetedExperimentToPQP(char * filename, TargetedExperiment & targeted_exp)

convertTargetedExperimentToTSV

Cython signature: void convertTargetedExperimentToTSV(char * filename, TargetedExperiment & targeted_exp)

validateTargetedExperiment

Cython signature: void validateTargetedExperiment(TargetedExperiment targeted_exp)
convertPQPToTargetedExperiment()#

  • Cython signature: void convertPQPToTargetedExperiment(char * filename, TargetedExperiment & targeted_exp, bool legacy_traml_id)

Parameters

  • filename – The input file

  • targeted_exp – The output targeted experiment

  • legacy_traml_id – Should legacy TraML IDs be used (boolean)? - Cython signature: void convertPQPToTargetedExperiment(char * filename, LightTargetedExperiment & targeted_exp, bool legacy_traml_id)

Parameters

  • filename – The input file

  • targeted_exp – The output targeted experiment

  • legacy_traml_id – Should legacy TraML IDs be used (boolean)?

convertTSVToTargetedExperiment()#

  • Cython signature: void convertTSVToTargetedExperiment(char * filename, FileType filetype, TargetedExperiment & targeted_exp)

  • Cython signature: void convertTSVToTargetedExperiment(char * filename, FileType filetype, LightTargetedExperiment & targeted_exp)

convertTargetedExperimentToPQP()#

Cython signature: void convertTargetedExperimentToPQP(char * filename, TargetedExperiment & targeted_exp)

Parameters

  • filename – The output file

  • targeted_exp – The targeted experiment

convertTargetedExperimentToTSV()#

Cython signature: void convertTargetedExperimentToTSV(char * filename, TargetedExperiment & targeted_exp)

validateTargetedExperiment()#

Cython signature: void validateTargetedExperiment(TargetedExperiment targeted_exp)