TOFCalibration#

class pyopenms.TOFCalibration#

Bases: object

Cython implementation of _TOFCalibration

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1TOFCalibration.html: – Inherits from [‘DefaultParamHandler’, ‘ProgressLogger’]

__init__()#

Cython signature: void TOFCalibration()
Cython signature: void TOFCalibration(TOFCalibration &)

Methods

`__init__`	Cython signature: void TOFCalibration()
`calibrate`	Cython signature: void calibrate(MSExperiment & input, MSExperiment & output, libcpp_vector[double] & exp_masses)
`endProgress`	Cython signature: void endProgress() Ends the progress display
`getDefaults`	Cython signature: Param getDefaults() Returns the default parameters
`getLogType`	Cython signature: LogType getLogType() Returns the type of progress log being used
`getML1s`	Cython signature: libcpp_vector[double] getML1s() Returns the first calibration constant
`getML2s`	Cython signature: libcpp_vector[double] getML2s()
`getML3s`	Cython signature: libcpp_vector[double] getML3s()
`getName`	Cython signature: String getName() Returns the name
`getParameters`	Cython signature: Param getParameters() Returns the parameters
`getSubsections`	Cython signature: libcpp_vector[String] getSubsections()
`nextProgress`	Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)
`pickAndCalibrate`	Cython signature: void pickAndCalibrate(MSExperiment & input, MSExperiment & output, libcpp_vector[double] & exp_masses)
`setLogType`	Cython signature: void setLogType(LogType) Sets the progress log that should be used.
`setML1s`	Cython signature: void setML1s(libcpp_vector[double] & ml1s)
`setML2s`	Cython signature: void setML2s(libcpp_vector[double] & ml2s) Returns the second calibration constant
`setML3s`	Cython signature: void setML3s(libcpp_vector[double] & ml3s) Returns the third calibration constant
`setName`	Cython signature: void setName(const String &) Sets the name
`setParameters`	Cython signature: void setParameters(Param & param) Sets the parameters
`setProgress`	Cython signature: void setProgress(ptrdiff_t value) Sets the current progress
`startProgress`	Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)

calibrate()#: Cython signature: void calibrate(MSExperiment & input, MSExperiment & output, libcpp_vector[double] & exp_masses)

endProgress()#: Cython signature: void endProgress() Ends the progress display

getDefaults()#: Cython signature: Param getDefaults() Returns the default parameters

getLogType()#: Cython signature: LogType getLogType() Returns the type of progress log being used

getML1s()#: Cython signature: libcpp_vector[double] getML1s() Returns the first calibration constant

getML2s()#: Cython signature: libcpp_vector[double] getML2s()

getML3s()#: Cython signature: libcpp_vector[double] getML3s()

getName()#: Cython signature: String getName() Returns the name

getParameters()#: Cython signature: Param getParameters() Returns the parameters

getSubsections()#: Cython signature: libcpp_vector[String] getSubsections()

nextProgress()#: Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)

pickAndCalibrate()#: Cython signature: void pickAndCalibrate(MSExperiment & input, MSExperiment & output, libcpp_vector[double] & exp_masses)

setLogType()#: Cython signature: void setLogType(LogType) Sets the progress log that should be used. The default type is NONE!

setML1s()#: Cython signature: void setML1s(libcpp_vector[double] & ml1s)

setML2s()#: Cython signature: void setML2s(libcpp_vector[double] & ml2s) Returns the second calibration constant

setML3s()#: Cython signature: void setML3s(libcpp_vector[double] & ml3s) Returns the third calibration constant

setName()#: Cython signature: void setName(const String &) Sets the name

setParameters()#: Cython signature: void setParameters(Param & param) Sets the parameters

setProgress()#: Cython signature: void setProgress(ptrdiff_t value) Sets the current progress

startProgress()#: Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)