CVTerm_ControlledVocabulary#

class pyopenms.CVTerm_ControlledVocabulary#

Bases: object

Cython implementation of _CVTerm_ControlledVocabulary

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1CVTerm_ControlledVocabulary.html

__init__()#

  • Cython signature: void CVTerm_ControlledVocabulary()

  • Cython signature: void CVTerm_ControlledVocabulary(CVTerm_ControlledVocabulary rhs)

Methods

__init__

  • Cython signature: void CVTerm_ControlledVocabulary()

getXRefTypeName

Cython signature: String getXRefTypeName(XRefType_CVTerm_ControlledVocabulary type)

isHigherBetterScore

Cython signature: bool isHigherBetterScore(CVTerm_ControlledVocabulary term)

toXMLString

  • Cython signature: String toXMLString(String ref, String value)

Attributes

children

description

id

name

obsolete

parents

synonyms

units

unparsed

xref_binary

xref_type

children#
description#
getXRefTypeName()#

Cython signature: String getXRefTypeName(XRefType_CVTerm_ControlledVocabulary type)

id#
isHigherBetterScore()#

Cython signature: bool isHigherBetterScore(CVTerm_ControlledVocabulary term)

name#
obsolete#
parents#
synonyms#
toXMLString()#

  • Cython signature: String toXMLString(String ref, String value) Get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available

  • Cython signature: String toXMLString(String ref, DataValue value) Get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available

units#
unparsed#
xref_binary#
xref_type#