PSProteinInference#

class pyopenms.PSProteinInference#

Bases: object

Cython implementation of _PSProteinInference

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1PSProteinInference.html

__init__()#

  • Cython signature: void PSProteinInference()

  • Cython signature: void PSProteinInference(PSProteinInference &)

Methods

__init__

  • Cython signature: void PSProteinInference()

calculateProteinProbabilities

Cython signature: void calculateProteinProbabilities(libcpp_vector[PeptideIdentification] & ids)

findMinimalProteinList

Cython signature: size_t findMinimalProteinList(libcpp_vector[PeptideIdentification] & peptide_ids)

getNumberOfProtIds

Cython signature: int getNumberOfProtIds(double protein_id_threshold)

getProteinProbability

Cython signature: double getProteinProbability(const String & acc)

getSolver

Cython signature: SOLVER getSolver()

isProteinInMinimalList

Cython signature: bool isProteinInMinimalList(const String & acc)
calculateProteinProbabilities()#

Cython signature: void calculateProteinProbabilities(libcpp_vector[PeptideIdentification] & ids)

findMinimalProteinList()#

Cython signature: size_t findMinimalProteinList(libcpp_vector[PeptideIdentification] & peptide_ids)

getNumberOfProtIds()#

Cython signature: int getNumberOfProtIds(double protein_id_threshold)

getProteinProbability()#

Cython signature: double getProteinProbability(const String & acc)

getSolver()#

Cython signature: SOLVER getSolver()

isProteinInMinimalList()#

Cython signature: bool isProteinInMinimalList(const String & acc)