MRMScoring#

class pyopenms.MRMScoring#

Bases: object

Cython implementation of _MRMScoring

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenSwath_1_1MRMScoring.html

__init__()#

Cython signature: void MRMScoring()
Cython signature: void MRMScoring(MRMScoring &)

Methods

`__init__`	Cython signature: void MRMScoring()
`calcMIPrecursorCombinedScore`	Cython signature: double calcMIPrecursorCombinedScore()
`calcMIPrecursorContrastScore`	Cython signature: double calcMIPrecursorContrastScore()
`calcMIPrecursorScore`	Cython signature: double calcMIPrecursorScore()
`calcMIScore`	Cython signature: double calcMIScore()
`calcMIWeightedScore`	Cython signature: double calcMIWeightedScore(const libcpp_vector[double] & normalized_library_intensity)
`calcRTScore`	Cython signature: double calcRTScore(LightCompound & peptide, double normalized_experimental_rt)
`calcSeparateMIContrastScore`	Cython signature: libcpp_vector[double] calcSeparateMIContrastScore()
`calcSeparateXcorrContrastCoelutionScore`	Cython signature: libcpp_vector[double] calcSeparateXcorrContrastCoelutionScore() Calculate the separate cross-correlation contrast score
`calcSeparateXcorrContrastShapeScore`	Cython signature: libcpp_vector[double] calcSeparateXcorrContrastShapeScore() Calculate the separate cross-correlation contrast shape score
`calcXcorrCoelutionScore`	Cython signature: double calcXcorrCoelutionScore() Calculate the cross-correlation coelution score.
`calcXcorrCoelutionWeightedScore`	Cython signature: double calcXcorrCoelutionWeightedScore(libcpp_vector[double] & normalized_library_intensity)
`calcXcorrPrecursorContrastCoelutionScore`	Cython signature: double calcXcorrPrecursorContrastCoelutionScore()
`calcXcorrPrecursorContrastShapeScore`	Cython signature: double calcXcorrPrecursorContrastShapeScore() Calculate the precursor cross-correlation shape score against the transitions
`calcXcorrShapeScore`	Cython signature: double calcXcorrShapeScore()
`calcXcorrShapeWeightedScore`	Cython signature: double calcXcorrShapeWeightedScore(libcpp_vector[double] & normalized_library_intensity)
`getMIMatrix`	Cython signature: MatrixDouble getMIMatrix()

calcMIPrecursorCombinedScore()#: Cython signature: double calcMIPrecursorCombinedScore()

calcMIPrecursorContrastScore()#: Cython signature: double calcMIPrecursorContrastScore()

calcMIPrecursorScore()#: Cython signature: double calcMIPrecursorScore()

calcMIScore()#: Cython signature: double calcMIScore()

calcMIWeightedScore()#: Cython signature: double calcMIWeightedScore(const libcpp_vector[double] & normalized_library_intensity)

calcRTScore()#: Cython signature: double calcRTScore(LightCompound & peptide, double normalized_experimental_rt)

calcSeparateMIContrastScore()#: Cython signature: libcpp_vector[double] calcSeparateMIContrastScore()

calcSeparateXcorrContrastCoelutionScore()#: Cython signature: libcpp_vector[double] calcSeparateXcorrContrastCoelutionScore() Calculate the separate cross-correlation contrast score

calcSeparateXcorrContrastShapeScore()#: Cython signature: libcpp_vector[double] calcSeparateXcorrContrastShapeScore() Calculate the separate cross-correlation contrast shape score

calcXcorrCoelutionScore()#: Cython signature: double calcXcorrCoelutionScore() Calculate the cross-correlation coelution score. The score is a distance where zero indicates perfect coelution

calcXcorrCoelutionWeightedScore()#

Cython signature: double calcXcorrCoelutionWeightedScore(libcpp_vector[double] & normalized_library_intensity)

The score is a distance where zero indicates perfect coelution. The score is weighted by the transition intensities, non-perfect coelution in low-intensity transitions should thus become less important

calcXcorrPrecursorContrastCoelutionScore()#

Cython signature: double calcXcorrPrecursorContrastCoelutionScore()

The score is a distance where zero indicates perfect coelution

calcXcorrPrecursorContrastShapeScore()#: Cython signature: double calcXcorrPrecursorContrastShapeScore() Calculate the precursor cross-correlation shape score against the transitions

calcXcorrShapeScore()#

Cython signature: double calcXcorrShapeScore()

The score is a correlation measure where 1 indicates perfect correlation and 0 means no correlation.

calcXcorrShapeWeightedScore()#

Cython signature: double calcXcorrShapeWeightedScore(libcpp_vector[double] & normalized_library_intensity)

The score is a correlation measure where 1 indicates perfect correlation and 0 means no correlation. The score is weighted by the transition intensities, non-perfect coelution in low-intensity transitions should thus become less important

getMIMatrix()#: Cython signature: MatrixDouble getMIMatrix()