SiriusMzTabWriter#

class pyopenms.SiriusMzTabWriter#

Bases: object

Cython implementation of _SiriusMzTabWriter

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1SiriusMzTabWriter.html

__init__()#

  • Cython signature: void SiriusMzTabWriter()

  • Cython signature: void SiriusMzTabWriter(SiriusMzTabWriter &)

Methods

__init__

  • Cython signature: void SiriusMzTabWriter()

extractFeatureId

Cython signature: String extractFeatureId(const String & path)

extractScanIndex

Cython signature: int extractScanIndex(const String & path)

extractScanNumber

Cython signature: int extractScanNumber(const String & path)

extractSpectrumMSInfo

Cython signature: SiriusMzTabWriter_SiriusSpectrumMSInfo extractSpectrumMSInfo(const String & single_sirius_path)

extract_columnname_to_columnindex

Cython signature: libcpp_map[libcpp_string,size_t] extract_columnname_to_columnindex(CsvFile & csvfile)

read

Cython signature: void read(libcpp_vector[String] & sirius_output_paths, const String & original_input_mzml, size_t top_n_hits, MzTab & result)
extractFeatureId()#

Cython signature: String extractFeatureId(const String & path)

extractScanIndex()#

Cython signature: int extractScanIndex(const String & path)

extractScanNumber()#

Cython signature: int extractScanNumber(const String & path)

extractSpectrumMSInfo()#

Cython signature: SiriusMzTabWriter_SiriusSpectrumMSInfo extractSpectrumMSInfo(const String & single_sirius_path)

extract_columnname_to_columnindex()#

Cython signature: libcpp_map[libcpp_string,size_t] extract_columnname_to_columnindex(CsvFile & csvfile)

read()#

Cython signature: void read(libcpp_vector[String] & sirius_output_paths, const String & original_input_mzml, size_t top_n_hits, MzTab & result)