MRMTransitionGroupPicker#

class pyopenms.MRMTransitionGroupPicker#

Bases: object

Cython implementation of _MRMTransitionGroupPicker

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1MRMTransitionGroupPicker.html: – Inherits from [‘DefaultParamHandler’]

__init__()#

Cython signature: void MRMTransitionGroupPicker()
Cython signature: void MRMTransitionGroupPicker(MRMTransitionGroupPicker &)

Methods

`__init__`	Cython signature: void MRMTransitionGroupPicker()
`createMRMFeature`	Cython signature: MRMFeature createMRMFeature(LightMRMTransitionGroupCP transition_group, libcpp_vector[MSChromatogram] & picked_chroms, libcpp_vector[MSChromatogram] & smoothed_chroms, const int chr_idx, const int peak_idx)
`findLargestPeak`	Cython signature: void findLargestPeak(libcpp_vector[MSChromatogram] & picked_chroms, int & chr_idx, int & peak_idx)
`findWidestPeakIndices`	Cython signature: void findWidestPeakIndices(libcpp_vector[MSChromatogram] & picked_chroms, int & chrom_idx, int & point_idx)
`getDefaults`	Cython signature: Param getDefaults() Returns the default parameters
`getName`	Cython signature: String getName() Returns the name
`getParameters`	Cython signature: Param getParameters() Returns the parameters
`getSubsections`	Cython signature: libcpp_vector[String] getSubsections()
`pickTransitionGroup`	Cython signature: void pickTransitionGroup(LightMRMTransitionGroupCP transition_group)
`remove_overlapping_features`	Cython signature: void remove_overlapping_features(libcpp_vector[MSChromatogram] & picked_chroms, double best_left, double best_right)
`setName`	Cython signature: void setName(const String &) Sets the name
`setParameters`	Cython signature: void setParameters(Param & param) Sets the parameters

createMRMFeature()#: Cython signature: MRMFeature createMRMFeature(LightMRMTransitionGroupCP transition_group, libcpp_vector[MSChromatogram] & picked_chroms, libcpp_vector[MSChromatogram] & smoothed_chroms, const int chr_idx, const int peak_idx)

findLargestPeak()#: Cython signature: void findLargestPeak(libcpp_vector[MSChromatogram] & picked_chroms, int & chr_idx, int & peak_idx)

findWidestPeakIndices()#: Cython signature: void findWidestPeakIndices(libcpp_vector[MSChromatogram] & picked_chroms, int & chrom_idx, int & point_idx)

getDefaults()#: Cython signature: Param getDefaults() Returns the default parameters

getName()#: Cython signature: String getName() Returns the name

getParameters()#: Cython signature: Param getParameters() Returns the parameters

getSubsections()#: Cython signature: libcpp_vector[String] getSubsections()

pickTransitionGroup()#

Cython signature: void pickTransitionGroup(LightMRMTransitionGroupCP transition_group)
Cython signature: void pickTransitionGroup(MRMTransitionGroupCP transition_group)

remove_overlapping_features()#: Cython signature: void remove_overlapping_features(libcpp_vector[MSChromatogram] & picked_chroms, double best_left, double best_right)

setName()#: Cython signature: void setName(const String &) Sets the name

setParameters()#: Cython signature: void setParameters(Param & param) Sets the parameters