XTandemInfile#

class pyopenms.XTandemInfile#

Bases: object

Cython implementation of _XTandemInfile

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1XTandemInfile.html

__init__()#: Cython signature: void XTandemInfile()

Methods

`__init__`	Cython signature: void XTandemInfile()
`getCleavageSite`	Cython signature: String getCleavageSite()
`getDefaultParametersFilename`	Cython signature: String getDefaultParametersFilename()
`getFragmentMassErrorUnit`	Cython signature: ErrorUnit getFragmentMassErrorUnit()
`getFragmentMassTolerance`	Cython signature: double getFragmentMassTolerance()
`getInputFilename`	Cython signature: String getInputFilename()
`getMaxPrecursorCharge`	Cython signature: int getMaxPrecursorCharge()
`getMaxValidEValue`	Cython signature: double getMaxValidEValue()
`getModifications`	Cython signature: ModificationDefinitionsSet getModifications()
`getNumberOfMissedCleavages`	Cython signature: unsigned int getNumberOfMissedCleavages()
`getNumberOfThreads`	Cython signature: unsigned int getNumberOfThreads()
`getOutputFilename`	Cython signature: String getOutputFilename()
`getOutputResults`	Cython signature: String getOutputResults()
`getPrecursorErrorType`	Cython signature: MassType getPrecursorErrorType()
`getPrecursorMassErrorUnit`	Cython signature: ErrorUnit getPrecursorMassErrorUnit()
`getPrecursorMassToleranceMinus`	Cython signature: double getPrecursorMassToleranceMinus()
`getPrecursorMassTolerancePlus`	Cython signature: double getPrecursorMassTolerancePlus()
`getTaxon`	Cython signature: String getTaxon()
`getTaxonomyFilename`	Cython signature: String getTaxonomyFilename()
`setAllowIsotopeError`	Cython signature: void setAllowIsotopeError(bool allow_isotope_error)
`setCleavageSite`	Cython signature: void setCleavageSite(String cleavage_site)
`setDefaultParametersFilename`	Cython signature: void setDefaultParametersFilename(const String & filename)
`setFragmentMassErrorUnit`	Cython signature: void setFragmentMassErrorUnit(ErrorUnit unit)
`setFragmentMassTolerance`	Cython signature: void setFragmentMassTolerance(double tolerance)
`setInputFilename`	Cython signature: void setInputFilename(const String & input_file)
`setMaxPrecursorCharge`	Cython signature: void setMaxPrecursorCharge(int max_charge)
`setMaxValidEValue`	Cython signature: void setMaxValidEValue(double value)
`setModifications`	Cython signature: void setModifications(ModificationDefinitionsSet & mods)
`setNumberOfMissedCleavages`	Cython signature: void setNumberOfMissedCleavages(unsigned int missed_cleavages)
`setNumberOfThreads`	Cython signature: void setNumberOfThreads(unsigned int threads)
`setOutputFilename`	Cython signature: void setOutputFilename(const String & output)
`setOutputResults`	Cython signature: void setOutputResults(String result)
`setPrecursorErrorType`	Cython signature: void setPrecursorErrorType(MassType mono_isotopic)
`setPrecursorMassErrorUnit`	Cython signature: void setPrecursorMassErrorUnit(ErrorUnit unit)
`setPrecursorMassToleranceMinus`	Cython signature: void setPrecursorMassToleranceMinus(double tol)
`setPrecursorMassTolerancePlus`	Cython signature: void setPrecursorMassTolerancePlus(double tol)
`setSemiCleavage`	Cython signature: void setSemiCleavage(bool semi_cleavage)
`setTaxon`	Cython signature: void setTaxon(const String & taxon)
`setTaxonomyFilename`	Cython signature: void setTaxonomyFilename(const String & filename)
`write`	Cython signature: void write(String filename, bool ignore_member_parameters, bool force_default_mods)

DerivatizationAgent#: alias of pyopenms.pyopenms_8.__DerivatizationAgent

ErrorUnit#: alias of pyopenms.pyopenms_8.__ErrorUnit

MassIntensityType#: alias of pyopenms.pyopenms_8.__MassIntensityType

MassType#: alias of pyopenms.pyopenms_8.__MassType

getCleavageSite()#: Cython signature: String getCleavageSite()

getDefaultParametersFilename()#: Cython signature: String getDefaultParametersFilename()

getFragmentMassErrorUnit()#: Cython signature: ErrorUnit getFragmentMassErrorUnit()

getFragmentMassTolerance()#: Cython signature: double getFragmentMassTolerance()

getInputFilename()#: Cython signature: String getInputFilename()

getMaxPrecursorCharge()#: Cython signature: int getMaxPrecursorCharge()

getMaxValidEValue()#: Cython signature: double getMaxValidEValue()

getModifications()#: Cython signature: ModificationDefinitionsSet getModifications()

getNumberOfMissedCleavages()#: Cython signature: unsigned int getNumberOfMissedCleavages()

getNumberOfThreads()#: Cython signature: unsigned int getNumberOfThreads()

getOutputFilename()#: Cython signature: String getOutputFilename()

getOutputResults()#: Cython signature: String getOutputResults()

getPrecursorErrorType()#: Cython signature: MassType getPrecursorErrorType()

getPrecursorMassErrorUnit()#: Cython signature: ErrorUnit getPrecursorMassErrorUnit()

getPrecursorMassToleranceMinus()#: Cython signature: double getPrecursorMassToleranceMinus()

getPrecursorMassTolerancePlus()#: Cython signature: double getPrecursorMassTolerancePlus()

getTaxon()#: Cython signature: String getTaxon()

getTaxonomyFilename()#: Cython signature: String getTaxonomyFilename()

setAllowIsotopeError()#: Cython signature: void setAllowIsotopeError(bool allow_isotope_error)

setCleavageSite()#: Cython signature: void setCleavageSite(String cleavage_site)

setDefaultParametersFilename()#: Cython signature: void setDefaultParametersFilename(const String & filename)

setFragmentMassErrorUnit()#: Cython signature: void setFragmentMassErrorUnit(ErrorUnit unit)

setFragmentMassTolerance()#: Cython signature: void setFragmentMassTolerance(double tolerance)

setInputFilename()#: Cython signature: void setInputFilename(const String & input_file)

setMaxPrecursorCharge()#: Cython signature: void setMaxPrecursorCharge(int max_charge)

setMaxValidEValue()#: Cython signature: void setMaxValidEValue(double value)

setModifications()#: Cython signature: void setModifications(ModificationDefinitionsSet & mods)

setNumberOfMissedCleavages()#: Cython signature: void setNumberOfMissedCleavages(unsigned int missed_cleavages)

setNumberOfThreads()#: Cython signature: void setNumberOfThreads(unsigned int threads)

setOutputFilename()#: Cython signature: void setOutputFilename(const String & output)

setOutputResults()#: Cython signature: void setOutputResults(String result)

setPrecursorErrorType()#: Cython signature: void setPrecursorErrorType(MassType mono_isotopic)

setPrecursorMassErrorUnit()#: Cython signature: void setPrecursorMassErrorUnit(ErrorUnit unit)

setPrecursorMassToleranceMinus()#: Cython signature: void setPrecursorMassToleranceMinus(double tol)

setPrecursorMassTolerancePlus()#: Cython signature: void setPrecursorMassTolerancePlus(double tol)

setSemiCleavage()#: Cython signature: void setSemiCleavage(bool semi_cleavage)

setTaxon()#: Cython signature: void setTaxon(const String & taxon)

setTaxonomyFilename()#: Cython signature: void setTaxonomyFilename(const String & filename)

write()#: Cython signature: void write(String filename, bool ignore_member_parameters, bool force_default_mods)