TargetedExperiment#

class pyopenms.TargetedExperiment#

Bases: object

Cython implementation of _TargetedExperiment

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1TargetedExperiment.html

__init__()#

Cython signature: void TargetedExperiment()
Cython signature: void TargetedExperiment(TargetedExperiment &)

Methods

`__init__`	Cython signature: void TargetedExperiment()
`addCV`	Cython signature: void addCV(CV cv)
`addCompound`	Cython signature: void addCompound(Compound rhs)
`addContact`	Cython signature: void addContact(Contact contact)
`addExcludeTarget`	Cython signature: void addExcludeTarget(IncludeExcludeTarget target)
`addIncludeTarget`	Cython signature: void addIncludeTarget(IncludeExcludeTarget target)
`addInstrument`	Cython signature: void addInstrument(TargetedExperiment_Instrument instrument)
`addPeptide`	Cython signature: void addPeptide(Peptide rhs)
`addProtein`	Cython signature: void addProtein(Protein protein)
`addPublication`	Cython signature: void addPublication(Publication publication)
`addSoftware`	Cython signature: void addSoftware(Software software)
`addSourceFile`	Cython signature: void addSourceFile(SourceFile source_file)
`addTargetCVTerm`	Cython signature: void addTargetCVTerm(CVTerm cv_term)
`addTransition`	Cython signature: void addTransition(ReactionMonitoringTransition transition)
`clear`	Cython signature: void clear(bool clear_meta_data)
`containsInvalidReferences`	Cython signature: bool containsInvalidReferences()
`getCVs`	Cython signature: libcpp_vector[CV] getCVs()
`getCompoundByRef`	Cython signature: Compound getCompoundByRef(String ref)
`getCompounds`	Cython signature: libcpp_vector[Compound] getCompounds()
`getContacts`	Cython signature: libcpp_vector[Contact] getContacts()
`getExcludeTargets`	Cython signature: libcpp_vector[IncludeExcludeTarget] getExcludeTargets()
`getIncludeTargets`	Cython signature: libcpp_vector[IncludeExcludeTarget] getIncludeTargets()
`getInstruments`	Cython signature: libcpp_vector[TargetedExperiment_Instrument] getInstruments()
`getPeptideByRef`	Cython signature: Peptide getPeptideByRef(String ref)
`getPeptides`	Cython signature: libcpp_vector[Peptide] getPeptides()
`getProteinByRef`	Cython signature: Protein getProteinByRef(String ref)
`getProteins`	Cython signature: libcpp_vector[Protein] getProteins()
`getPublications`	Cython signature: libcpp_vector[Publication] getPublications()
`getSoftware`	Cython signature: libcpp_vector[Software] getSoftware()
`getSourceFiles`	Cython signature: libcpp_vector[SourceFile] getSourceFiles()
`getTargetCVTerms`	Cython signature: CVTermList getTargetCVTerms()
`getTransitions`	Cython signature: libcpp_vector[ReactionMonitoringTransition] getTransitions()
`hasCompound`	Cython signature: bool hasCompound(String ref)
`hasPeptide`	Cython signature: bool hasPeptide(String ref)
`hasProtein`	Cython signature: bool hasProtein(String ref)
`setCVs`	Cython signature: void setCVs(libcpp_vector[CV] cvs)
`setCompounds`	Cython signature: void setCompounds(libcpp_vector[Compound] rhs)
`setContacts`	Cython signature: void setContacts(libcpp_vector[Contact] contacts)
`setExcludeTargets`	Cython signature: void setExcludeTargets(libcpp_vector[IncludeExcludeTarget] targets)
`setIncludeTargets`	Cython signature: void setIncludeTargets(libcpp_vector[IncludeExcludeTarget] targets)
`setInstruments`	Cython signature: void setInstruments(libcpp_vector[TargetedExperiment_Instrument] instruments)
`setPeptides`	Cython signature: void setPeptides(libcpp_vector[Peptide] rhs)
`setProteins`	Cython signature: void setProteins(libcpp_vector[Protein] proteins)
`setPublications`	Cython signature: void setPublications(libcpp_vector[Publication] publications)
`setSoftware`	Cython signature: void setSoftware(libcpp_vector[Software] software)
`setSourceFiles`	Cython signature: void setSourceFiles(libcpp_vector[SourceFile] source_files)
`setTargetCVTerms`	Cython signature: void setTargetCVTerms(CVTermList cv_terms)
`setTargetMetaValue`	Cython signature: void setTargetMetaValue(String name, DataValue value)
`setTransitions`	Cython signature: void setTransitions(libcpp_vector[ReactionMonitoringTransition] transitions)
`sortTransitionsByProductMZ`	Cython signature: void sortTransitionsByProductMZ()

addCV()#: Cython signature: void addCV(CV cv)

addCompound()#: Cython signature: void addCompound(Compound rhs)

addContact()#: Cython signature: void addContact(Contact contact)

addExcludeTarget()#: Cython signature: void addExcludeTarget(IncludeExcludeTarget target)

addIncludeTarget()#: Cython signature: void addIncludeTarget(IncludeExcludeTarget target)

addInstrument()#: Cython signature: void addInstrument(TargetedExperiment_Instrument instrument)

addPeptide()#: Cython signature: void addPeptide(Peptide rhs)

addProtein()#: Cython signature: void addProtein(Protein protein)

addPublication()#: Cython signature: void addPublication(Publication publication)

addSoftware()#: Cython signature: void addSoftware(Software software)

addSourceFile()#: Cython signature: void addSourceFile(SourceFile source_file)

addTargetCVTerm()#: Cython signature: void addTargetCVTerm(CVTerm cv_term)

addTransition()#: Cython signature: void addTransition(ReactionMonitoringTransition transition)

clear()#: Cython signature: void clear(bool clear_meta_data)

containsInvalidReferences()#: Cython signature: bool containsInvalidReferences()

getCVs()#: Cython signature: libcpp_vector[CV] getCVs()

getCompoundByRef()#: Cython signature: Compound getCompoundByRef(String ref)

getCompounds()#: Cython signature: libcpp_vector[Compound] getCompounds()

getContacts()#: Cython signature: libcpp_vector[Contact] getContacts()

getExcludeTargets()#: Cython signature: libcpp_vector[IncludeExcludeTarget] getExcludeTargets()

getIncludeTargets()#: Cython signature: libcpp_vector[IncludeExcludeTarget] getIncludeTargets()

getInstruments()#: Cython signature: libcpp_vector[TargetedExperiment_Instrument] getInstruments()

getPeptideByRef()#: Cython signature: Peptide getPeptideByRef(String ref)

getPeptides()#: Cython signature: libcpp_vector[Peptide] getPeptides()

getProteinByRef()#: Cython signature: Protein getProteinByRef(String ref)

getProteins()#: Cython signature: libcpp_vector[Protein] getProteins()

getPublications()#: Cython signature: libcpp_vector[Publication] getPublications()

getSoftware()#: Cython signature: libcpp_vector[Software] getSoftware()

getSourceFiles()#: Cython signature: libcpp_vector[SourceFile] getSourceFiles()

getTargetCVTerms()#: Cython signature: CVTermList getTargetCVTerms()

getTransitions()#: Cython signature: libcpp_vector[ReactionMonitoringTransition] getTransitions()

hasCompound()#: Cython signature: bool hasCompound(String ref)

hasPeptide()#: Cython signature: bool hasPeptide(String ref)

hasProtein()#: Cython signature: bool hasProtein(String ref)

setCVs()#: Cython signature: void setCVs(libcpp_vector[CV] cvs)

setCompounds()#: Cython signature: void setCompounds(libcpp_vector[Compound] rhs)

setContacts()#: Cython signature: void setContacts(libcpp_vector[Contact] contacts)

setExcludeTargets()#: Cython signature: void setExcludeTargets(libcpp_vector[IncludeExcludeTarget] targets)

setIncludeTargets()#: Cython signature: void setIncludeTargets(libcpp_vector[IncludeExcludeTarget] targets)

setInstruments()#: Cython signature: void setInstruments(libcpp_vector[TargetedExperiment_Instrument] instruments)

setPeptides()#: Cython signature: void setPeptides(libcpp_vector[Peptide] rhs)

setProteins()#: Cython signature: void setProteins(libcpp_vector[Protein] proteins)

setPublications()#: Cython signature: void setPublications(libcpp_vector[Publication] publications)

setSoftware()#: Cython signature: void setSoftware(libcpp_vector[Software] software)

setSourceFiles()#: Cython signature: void setSourceFiles(libcpp_vector[SourceFile] source_files)

setTargetCVTerms()#: Cython signature: void setTargetCVTerms(CVTermList cv_terms)

setTargetMetaValue()#: Cython signature: void setTargetMetaValue(String name, DataValue value)

setTransitions()#: Cython signature: void setTransitions(libcpp_vector[ReactionMonitoringTransition] transitions)

sortTransitionsByProductMZ()#: Cython signature: void sortTransitionsByProductMZ()