OpenSwathDataAccessHelper#

class pyopenms.OpenSwathDataAccessHelper#

Bases: object

Cython implementation of _OpenSwathDataAccessHelper

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1OpenSwathDataAccessHelper.html

__init__()#

Cython signature: void OpenSwathDataAccessHelper()
Cython signature: void OpenSwathDataAccessHelper(OpenSwathDataAccessHelper &)

Methods

`__init__`	Cython signature: void OpenSwathDataAccessHelper()
`convertPeptideToAASequence`	Cython signature: void convertPeptideToAASequence(LightCompound & peptide, AASequence & aa_sequence) Converts from the LightCompound to an OpenMS AASequence (with correct modifications)
`convertTargetedCompound`	Cython signature: void convertTargetedCompound(Peptide pep, LightCompound & p) Converts from the OpenMS TargetedExperiment Peptide to the LightTargetedExperiment Peptide
`convertTargetedExp`	Cython signature: void convertTargetedExp(TargetedExperiment & transition_exp_, LightTargetedExperiment & transition_exp) Converts from the OpenMS TargetedExperiment to the OpenMs LightTargetedExperiment
`convertToChromatogramPtr`
`convertToOpenMSChromatogram`	Cython signature: void convertToOpenMSChromatogram(shared_ptr[OSChromatogram] cptr, MSChromatogram & chromatogram) Converts a ChromatogramPtr to an OpenMS Chromatogram
`convertToOpenMSChromatogramFilter`	Cython signature: void convertToOpenMSChromatogramFilter(MSChromatogram & chromatogram, shared_ptr[OSChromatogram] cptr, double rt_min, double rt_max)
`convertToOpenMSSpectrum`	Cython signature: void convertToOpenMSSpectrum(shared_ptr[OSSpectrum] sptr, MSSpectrum & spectrum) Converts a SpectrumPtr to an OpenMS Spectrum
`convertToSpectrumPtr`

convertPeptideToAASequence()#: Cython signature: void convertPeptideToAASequence(LightCompound & peptide, AASequence & aa_sequence) Converts from the LightCompound to an OpenMS AASequence (with correct modifications)

convertTargetedCompound()#: Cython signature: void convertTargetedCompound(Peptide pep, LightCompound & p) Converts from the OpenMS TargetedExperiment Peptide to the LightTargetedExperiment Peptide

convertTargetedExp()#: Cython signature: void convertTargetedExp(TargetedExperiment & transition_exp_, LightTargetedExperiment & transition_exp) Converts from the OpenMS TargetedExperiment to the OpenMs LightTargetedExperiment

convertToChromatogramPtr()#

convertToOpenMSChromatogram()#: Cython signature: void convertToOpenMSChromatogram(shared_ptr[OSChromatogram] cptr, MSChromatogram & chromatogram) Converts a ChromatogramPtr to an OpenMS Chromatogram

convertToOpenMSChromatogramFilter()#: Cython signature: void convertToOpenMSChromatogramFilter(MSChromatogram & chromatogram, shared_ptr[OSChromatogram] cptr, double rt_min, double rt_max)

convertToOpenMSSpectrum()#: Cython signature: void convertToOpenMSSpectrum(shared_ptr[OSSpectrum] sptr, MSSpectrum & spectrum) Converts a SpectrumPtr to an OpenMS Spectrum

convertToSpectrumPtr()#