ProteinResolver#

class pyopenms.ProteinResolver#

Bases: object

Cython implementation of _ProteinResolver

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1ProteinResolver.html: – Inherits from [‘DefaultParamHandler’]

__init__()#

Cython signature: void ProteinResolver()
Cython signature: void ProteinResolver(ProteinResolver &)

Methods

`__init__`	Cython signature: void ProteinResolver()
`clearResult`	Cython signature: void clearResult()
`countTargetDecoy`	Cython signature: void countTargetDecoy(libcpp_vector[MSDGroup] & msd_groups, ConsensusMap & consensus)
`getDefaults`	Cython signature: Param getDefaults() Returns the default parameters
`getName`	Cython signature: String getName() Returns the name
`getParameters`	Cython signature: Param getParameters() Returns the parameters
`getPeptideHit`	Cython signature: PeptideHit getPeptideHit(ConsensusMap & consensus, PeptideEntry * peptide)
`getPeptideIdentification`	Cython signature: PeptideIdentification getPeptideIdentification(ConsensusMap & consensus, PeptideEntry * peptide)
`getResults`	Cython signature: libcpp_vector[ResolverResult] getResults()
`getSubsections`	Cython signature: libcpp_vector[String] getSubsections()
`resolveConsensus`	Cython signature: void resolveConsensus(ConsensusMap & consensus)
`resolveID`	Cython signature: void resolveID(libcpp_vector[PeptideIdentification] & peptide_identifications)
`setName`	Cython signature: void setName(const String &) Sets the name
`setParameters`	Cython signature: void setParameters(Param & param) Sets the parameters
`setProteinData`	Cython signature: void setProteinData(libcpp_vector[FASTAEntry] & protein_data)

clearResult()#: Cython signature: void clearResult()

countTargetDecoy()#

Cython signature: void countTargetDecoy(libcpp_vector[MSDGroup] & msd_groups, ConsensusMap & consensus)
Cython signature: void countTargetDecoy(libcpp_vector[MSDGroup] & msd_groups, libcpp_vector[PeptideIdentification] & peptide_nodes)

getDefaults()#: Cython signature: Param getDefaults() Returns the default parameters

getName()#: Cython signature: String getName() Returns the name

getParameters()#: Cython signature: Param getParameters() Returns the parameters

getPeptideHit()#

Cython signature: PeptideHit getPeptideHit(ConsensusMap & consensus, PeptideEntry * peptide)
Cython signature: PeptideHit getPeptideHit(libcpp_vector[PeptideIdentification] & peptide_nodes, PeptideEntry * peptide)

getPeptideIdentification()#

Cython signature: PeptideIdentification getPeptideIdentification(ConsensusMap & consensus, PeptideEntry * peptide)
Cython signature: PeptideIdentification getPeptideIdentification(libcpp_vector[PeptideIdentification] & peptide_nodes, PeptideEntry * peptide)

getResults()#: Cython signature: libcpp_vector[ResolverResult] getResults()

getSubsections()#: Cython signature: libcpp_vector[String] getSubsections()

resolveConsensus()#: Cython signature: void resolveConsensus(ConsensusMap & consensus)

resolveID()#: Cython signature: void resolveID(libcpp_vector[PeptideIdentification] & peptide_identifications)

setName()#: Cython signature: void setName(const String &) Sets the name

setParameters()#: Cython signature: void setParameters(Param & param) Sets the parameters

setProteinData()#: Cython signature: void setProteinData(libcpp_vector[FASTAEntry] & protein_data)