CachedMzMLHandler#

class pyopenms.CachedMzMLHandler#

Bases: object

Cython implementation of _CachedMzMLHandler

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS::Internal_1_1CachedMzMLHandler.html: – Inherits from [‘ProgressLogger’]

__init__()#

Cython signature: void CachedMzMLHandler() An internal class that handles single spectra and chromatograms
Cython signature: void CachedMzMLHandler(CachedMzMLHandler &)

Methods

`__init__`	Cython signature: void CachedMzMLHandler()
`createMemdumpIndex`	Cython signature: void createMemdumpIndex(String filename) Create an index on the location of all the spectra and chromatograms
`endProgress`	Cython signature: void endProgress() Ends the progress display
`getChromatogramIndex`	Cython signature: libcpp_vector[streampos] getChromatogramIndex()
`getLogType`	Cython signature: LogType getLogType() Returns the type of progress log being used
`getSpectraIndex`	Cython signature: libcpp_vector[streampos] getSpectraIndex()
`nextProgress`	Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)
`readMemdump`	Cython signature: void readMemdump(MSExperiment exp, String filename) Read all spectra from a dump from the disk
`setLogType`	Cython signature: void setLogType(LogType) Sets the progress log that should be used.
`setProgress`	Cython signature: void setProgress(ptrdiff_t value) Sets the current progress
`startProgress`	Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)
`writeMemdump`	Cython signature: void writeMemdump(MSExperiment exp, String out) Write complete spectra as a dump to the disk
`writeMetadata`	Cython signature: void writeMetadata(MSExperiment exp, String out_meta) Write only the meta data of an MSExperiment

createMemdumpIndex()#: Cython signature: void createMemdumpIndex(String filename) Create an index on the location of all the spectra and chromatograms

endProgress()#: Cython signature: void endProgress() Ends the progress display

getChromatogramIndex()#: Cython signature: libcpp_vector[streampos] getChromatogramIndex()

getLogType()#: Cython signature: LogType getLogType() Returns the type of progress log being used

getSpectraIndex()#: Cython signature: libcpp_vector[streampos] getSpectraIndex()

nextProgress()#: Cython signature: void nextProgress() Increment progress by 1 (according to range begin-end)

readMemdump()#: Cython signature: void readMemdump(MSExperiment exp, String filename) Read all spectra from a dump from the disk

setLogType()#: Cython signature: void setLogType(LogType) Sets the progress log that should be used. The default type is NONE!

setProgress()#: Cython signature: void setProgress(ptrdiff_t value) Sets the current progress

startProgress()#: Cython signature: void startProgress(ptrdiff_t begin, ptrdiff_t end, String label)

writeMemdump()#: Cython signature: void writeMemdump(MSExperiment exp, String out) Write complete spectra as a dump to the disk

writeMetadata()#: Cython signature: void writeMetadata(MSExperiment exp, String out_meta) Write only the meta data of an MSExperiment