OpenSwath_Scores#

class pyopenms.OpenSwath_Scores#

Bases: object

Cython implementation of _OpenSwath_Scores

Documentation is available at http://www.openms.de/current_doxygen/html/classOpenMS_1_1OpenSwath_Scores.html

__init__()#: Cython signature: void OpenSwath_Scores()

Methods

`__init__`	Cython signature: void OpenSwath_Scores()
`calculate_lda_prescore`	Cython signature: double calculate_lda_prescore(OpenSwath_Scores scores)
`calculate_swath_lda_prescore`	Cython signature: double calculate_swath_lda_prescore(OpenSwath_Scores scores)
`get_quick_lda_score`	Cython signature: double get_quick_lda_score(double library_corr_, double library_norm_manhattan_, double norm_rt_score_, double xcorr_coelution_score_, double xcorr_shape_score_, double log_sn_score_)

Attributes

`bseries_score`
`dotprod_score_dia`
`elution_model_fit_score`
`intensity`
`isotope_correlation`
`isotope_overlap`
`library_corr`
`library_dotprod`
`library_manhattan`
`library_norm_manhattan`
`library_rootmeansquare`
`library_sangle`
`log_sn_score`
`manhatt_score_dia`
`massdev_score`
`mi_score`
`ms1_isotope_correlation`
`ms1_isotope_overlap`
`ms1_mi_combined_score`
`ms1_mi_contrast_score`
`ms1_mi_score`
`ms1_ppm_score`
`ms1_xcorr_coelution_combined_score`
`ms1_xcorr_coelution_contrast_score`
`ms1_xcorr_coelution_score`
`ms1_xcorr_shape_combined_score`
`ms1_xcorr_shape_contrast_score`
`ms1_xcorr_shape_score`
`norm_rt_score`
`normalized_experimental_rt`
`nr_peaks`
`raw_rt_score`
`rt_difference`
`sn_ratio`
`sonar_diff`
`sonar_lag`
`sonar_rsq`
`sonar_shape`
`sonar_sn`
`sonar_trend`
`total_xic`
`weighted_coelution_score`
`weighted_massdev_score`
`weighted_mi_score`
`weighted_xcorr_shape`
`xcorr_coelution_score`
`xcorr_shape_score`
`yseries_score`

bseries_score#

calculate_lda_prescore()#: Cython signature: double calculate_lda_prescore(OpenSwath_Scores scores)

calculate_swath_lda_prescore()#: Cython signature: double calculate_swath_lda_prescore(OpenSwath_Scores scores)

dotprod_score_dia#

elution_model_fit_score#

get_quick_lda_score()#: Cython signature: double get_quick_lda_score(double library_corr_, double library_norm_manhattan_, double norm_rt_score_, double xcorr_coelution_score_, double xcorr_shape_score_, double log_sn_score_)

intensity#

isotope_correlation#

isotope_overlap#

library_corr#

library_dotprod#

library_manhattan#

library_norm_manhattan#

library_rootmeansquare#

library_sangle#

log_sn_score#

manhatt_score_dia#

massdev_score#

mi_score#

ms1_isotope_correlation#

ms1_isotope_overlap#

ms1_mi_combined_score#

ms1_mi_contrast_score#

ms1_mi_score#

ms1_ppm_score#

ms1_xcorr_coelution_combined_score#

ms1_xcorr_coelution_contrast_score#

ms1_xcorr_coelution_score#

ms1_xcorr_shape_combined_score#

ms1_xcorr_shape_contrast_score#

ms1_xcorr_shape_score#

norm_rt_score#

normalized_experimental_rt#

nr_peaks#

raw_rt_score#

rt_difference#

sn_ratio#

sonar_diff#

sonar_lag#

sonar_rsq#

sonar_shape#

sonar_sn#

sonar_trend#

total_xic#

weighted_coelution_score#

weighted_massdev_score#

weighted_mi_score#

weighted_xcorr_shape#

xcorr_coelution_score#

xcorr_shape_score#

yseries_score#